Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g4220 ATGGCTAACATTATGGTGAATGCTACTCCTCCTCCCACACTTCTTTCCTGCACCTTCTTGTTCATTCTCTTTAGTTTTCTCCCTCAAATCATAGCGCAGGACCAAGTGTCCAAAACATTCATCTTGAGGATCGATTCCGGATCGAAGCCGTCAGTTTTCCCGACACACTACCACTGGTACACCTCGGAGTTCGCGGAGCCAACCCGCATCGTCCATCTCTACGACACCGTTTTCCACGGCTTCTCCGCAGTGCTAACCCACCAACAAGTCGCTTCTCTGGGCCAGCACCCCTCCGTGCTGGCGGTCTTGGAGGACCGTCGCCGCCAACTACACACCACTCGCTCCCCTCAGTTCGTTGGCCTCAGAAACCAACGCGGCCTGTGGTCCGAAACCGACTACGGATCCGACGTCATCATCGGAGTCTTCGACACCGGAATCTGGCCGGAGCGCCGGAGCTTCAGCGATTCCAACCTGGGCCCCATCCCTAGACGCTGGAAAGGGGTTTGCGAGACCGGTTTCAAGTTCTCGCCCAGTAACTGCAACAGGAAGCTGATCGGTGCGAGATTCTTCTCCAGAGGTCACGAGGCAAGCGGCGCCTCCGTCAACGACACCGTCGAATTCCGTTCGCCTCGGGACGCGGACGGCCACGGAACCCACACGGCGTCAACCGCGGCGGGTCGCTACGTTTTCGAAGCCAGCATGGCGGGCTATGCTCACGGAGTCGCAAAGGGCGTGGCTCCCAAAGCGAGATTGGCCATGTACAAGGTGTGCTGGAAGAATTCCGGTTGCTTCGACTCTGACATCCTCGCCGCATTCGACGCCGCCGTGGCCGACGGCGTCGACGTCATCTCTATGTCCATCGGCGGCGGCGACGGCATTGCTTCCCCTTACTATCTAGACCCCATTGCGATCGGGTCATACGGTGCAGTTTCCAGAGGCGTTTTTGTGTCTTCTTCGGGCGGAAACGACGGGCCAAGTGGAATGTCGGTGACCAACCTCGCTCCGTGGTTAACCACCGTCGGAGCAGGAACTATTGATCGCGATTTCCCTGCGGAGGTTATATTGGGCAACGGCAGAAGACTCTCCGGCGTGTCTCTTTACTCCGGAGTGCCGTTGAAGGGGAAAATGTATCCGTTAGTTTACCCCGGAAAATCAGGGGTTCTCACGGATTCACTGTGCATGGAAAACTCGTTAGACCCAGAACTCGTGAAAGGGAAGATAGTGGTATGCGATAGAGGTAGTAGCCCTAGAGTTGCGAAGGGGTTGGTGGTGAAGAAAGCAGGAGGCGTGGGAATGATTCTGGCAAACGGAATATCCAACGGGGAAGGTCTTGTTGGGGACGCTCATCTTCTTCCCGCGTGTGCCCTTGGCGCTAACGGAGGAGATGAAATCAAAGCGTATATCTCCTCCTCTGCGAACCCCAAGGCTACTATCGATTTCAAAGGCACTGTGGTTGGAATCAAACCGGCACCCGTTGTGGCGTCGTTTTCTGCGAGGGGACCCAACGGCTTGAGCGCGGAAATACTTAAACCGGATTTGACCGCTCCGGGAGTGAACATTCTCGCCGCGTGGACCCATGCCGTGGGGCCTTCCGGGTTGGACTCCGACACCAGAAGAACCGAGTTCAACATTTTGTCGGGCACGTCCATGGCGTGTCCTCACGTGAGCGGCGCTGCGGCGTTGTTGAAGTCCGCGCATCCTGACTGGAGCCCTGCCGCCGTAAGGTCTGCGATGATGACAACCGCGACGGTTCTTGACAACACCAACCGCCCCATGATTGATCAAGCAACTGGGAATGGCTCCACGCCCTATGATTTCGGCGCTGGACATCTCAACCTCGCTCTTGCCATGGACCCTGGCTTGGTTTACGACATTACCAACGATGATTACCTTACCTTCCTCTGTGCTATTGGTTACGGGCCCAGGTTGATTCAGGTGATTACTCGGTCGCCGCCGAATTGTCCGCGGAGGACGCCGTTGCCGGAGAATCTGAATTACCCGTCGTTTGTGGCGGTCTTGCCGGTCTCGTCGTCGTCGAGCAAGACGTTCTTCAGGACGGTGACGAACGTGGGCGCGCCGAATTCGGTGTATCGGGTGCGGGTGGAGTCGCAGGCTGAGGGGGTGATGGTGACGGTGAGGCCGTCGCGCCTCGTGTTTTCGGAGGCAGTTAAGAAGCGGAGTTTCGTGGTGACGGTGACGGCGGATGCCCGGAATCTGGAGCTGGGTCAGGCCGGGGCGGTGTTCGGGTCGCTTTCGTGGACAGATGGGAAGCACGTGGTTCGGAGCCCCATAGTGGTTACTCAAGTTCAACCGCTTTAA 2319 0.5744 MANIMVNATPPPTLLSCTFLFILFSFLPQIIAQDQVSKTFILRIDSGSKPSVFPTHYHWYTSEFAEPTRIVHLYDTVFHGFSAVLTHQQVASLGQHPSVLAVLEDRRRQLHTTRSPQFVGLRNQRGLWSETDYGSDVIIGVFDTGIWPERRSFSDSNLGPIPRRWKGVCETGFKFSPSNCNRKLIGARFFSRGHEASGASVNDTVEFRSPRDADGHGTHTASTAAGRYVFEASMAGYAHGVAKGVAPKARLAMYKVCWKNSGCFDSDILAAFDAAVADGVDVISMSIGGGDGIASPYYLDPIAIGSYGAVSRGVFVSSSGGNDGPSGMSVTNLAPWLTTVGAGTIDRDFPAEVILGNGRRLSGVSLYSGVPLKGKMYPLVYPGKSGVLTDSLCMENSLDPELVKGKIVVCDRGSSPRVAKGLVVKKAGGVGMILANGISNGEGLVGDAHLLPACALGANGGDEIKAYISSSANPKATIDFKGTVVGIKPAPVVASFSARGPNGLSAEILKPDLTAPGVNILAAWTHAVGPSGLDSDTRRTEFNILSGTSMACPHVSGAAALLKSAHPDWSPAAVRSAMMTTATVLDNTNRPMIDQATGNGSTPYDFGAGHLNLALAMDPGLVYDITNDDYLTFLCAIGYGPRLIQVITRSPPNCPRRTPLPENLNYPSFVAVLPVSSSSSKTFFRTVTNVGAPNSVYRVRVESQAEGVMVTVRPSRLVFSEAVKKRSFVVTVTADARNLELGQAGAVFGSLSWTDGKHVVRSPIVVTQVQPL 772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g4220 772 ProSiteProfiles Serine proteases, subtilase domain profile. 113 617 - -
Ssu1g4220 772 CDD Peptidases_S8_3 109 583 IPR034197 -
Ssu1g4220 772 Pfam Fibronectin type-III domain 663 766 IPR041469 -
Ssu1g4220 772 Gene3D - 346 485 - -
Ssu1g4220 772 SUPERFAMILY Subtilisin-like 110 621 IPR036852 GO:0004252|GO:0006508
Ssu1g4220 772 ProSitePatterns Serine proteases, subtilase family, serine active site. 547 557 IPR023828 -
Ssu1g4220 772 PRINTS Subtilisin serine protease family (S8) signature 212 225 IPR015500 -
Ssu1g4220 772 PRINTS Subtilisin serine protease family (S8) signature 546 562 IPR015500 -
Ssu1g4220 772 PRINTS Subtilisin serine protease family (S8) signature 134 153 IPR015500 -
Ssu1g4220 772 Pfam Peptidase inhibitor I9 43 111 IPR010259 -
Ssu1g4220 772 Gene3D Peptidase S8/S53 domain 136 630 IPR036852 GO:0004252|GO:0006508
Ssu1g4220 772 PANTHER XYLEM SERINE PROTEINASE 1 29 766 - -
Ssu1g4220 772 Gene3D - 634 769 - -
Ssu1g4220 772 Pfam PA domain 377 463 IPR003137 -
Ssu1g4220 772 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 29 766 IPR045051 -
Ssu1g4220 772 SUPERFAMILY PA domain 400 469 IPR046450 -
Ssu1g4220 772 CDD PA_subtilisin_like 353 478 - -
Ssu1g4220 772 Pfam Subtilase family 134 600 IPR000209 GO:0006508|GO:0008236
Ssu1g4220 772 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 29 111 IPR037045 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g4220 Ssu-Chr1 102538165 102540483 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g4220 14 772 Subtilisin-like Serine Gene Family AT4G34980 73.725 0.0 1170