Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g4218 ATGCGTAAAGCAATTTCGTTTCTCGTTCAACCGCGAtgcctccttctcttccttgttttctcaattttcttgATTCTCGCAATATCTAGTTCCAAATGGgttgaagagaaagaagaacaaCCTGAAATTACGGAGAGAGTGTTCTTGGATGTTGATATTGATGGACAACGTTTAgGTAGGATTGTCATTGGACTATATGGCCAAGTTGTACCAAAAACTGTGGAAAATGTTAGAGCTTTGTGCACAGGTGAGAAAGGAAAGAGTGCCAGTGGTGTAAAGCTTCATTACAAAGGAACACCATTTCATAGGATAATATCAGGTTTCATGATTCAGGGTGGGGACATTGTTCATCGTGATGGAAGAGGATATGAATCTGTTTATGGTGGCACCTTTCCTGATGAGAATTTCAAGACAAAACATTCACATGCTGGTGTAGTCTCTATGGTGAATTCAGGCCCTGATTCCAATGGCTCACAATTTTTTATCACCACAGTGAAAACCAGTTGGTTAGATGGAGAACATGTTGTGTTTGGCAAGGTTGTGCAAGGCATGGATACTGTGTTTGCAATTGAAGGGGGTGCAGGAACCTACAATGGGAAACCCAGAAAAAAGGTAGTGATTGCAGACTCTGGAGAGATACCCAAGACCCAATGGGATGAGGAAAGATGA 669 0.3842 MRKAISFLVQPRCLLLFLVFSIFLILAISSSKWVEEKEEQPEITERVFLDVDIDGQRLGRIVIGLYGQVVPKTVENVRALCTGEKGKSASGVKLHYKGTPFHRIISGFMIQGGDIVHRDGRGYESVYGGTFPDENFKTKHSHAGVVSMVNSGPDSNGSQFFITTVKTSWLDGEHVVFGKVVQGMDTVFAIEGGAGTYNGKPRKKVVIADSGEIPKTQWDEER 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g4218 222 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 51 210 IPR002130 GO:0000413|GO:0003755
Ssu1g4218 222 Gene3D - 32 219 IPR029000 -
Ssu1g4218 222 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 48 212 IPR002130 GO:0000413|GO:0003755
Ssu1g4218 222 SUPERFAMILY Cyclophilin-like 42 213 IPR029000 -
Ssu1g4218 222 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 26 221 - -
Ssu1g4218 222 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 96 113 IPR020892 GO:0003755|GO:0006457
Ssu1g4218 222 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 26 221 - -
Ssu1g4218 222 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 172 187 IPR002130 GO:0000413|GO:0003755
Ssu1g4218 222 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 144 159 IPR002130 GO:0000413|GO:0003755
Ssu1g4218 222 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 65 80 IPR002130 GO:0000413|GO:0003755
Ssu1g4218 222 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 101 113 IPR002130 GO:0000413|GO:0003755
Ssu1g4218 222 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 159 171 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g4218 Ssu-Chr1 102474903 102479460 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g4218 59 210 U-box Gene Family AT5G67530 41.176 8.17e-26 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g4218 - - gmx:100808240 395.586