Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g4210 atgAGTGAGAGTGAGAAGCAGAGGGTATCTGGGAAGGTGAAGTGGTTCAATGACCAGAAGGGTTTCGGCTTTATAACCACCGACGACGGCGGCGAGGATCTCTTCGTCCACCAGTCCTCCATCCGATCCGACGGCTTCCGCAGCCTCGCCCTCGGCGAGTCCGTCGAGTTCGTCATCGAATCCGATCCGGAGGGACGCACCAAGGCCGTCGACGTCACCGGCCCCGACGAGACGCCCGTTCAGGGCAGCCGCCGCGGCCCTCCCTCCTCCGCTGGAGGCGGACGCGGCGGATACGGTGGCGGACGCGGCGGAGGCGGCGGTGGAGGTGGTTATGGAGGTGGCTATGGCGGCGGCGGCGGTGGAGGGGGTTATGGAGGTGGCTATGGTGGCGGCGGTGGAGGGGGTTGCTATAAGTGTGGCGAGACGGGTCACATAGCTAGAGACTGCAGCCAaggtggcggcggcggcggaAGGTACGGAGGGGgaggcggcggcggcggcggcgggaGCTGCTACAACTGTGGGGAGTCTGGGCATTTTGCCAGGGACTGCCCTTCCAATGCTCGTTGA 570 0.5947 MSESEKQRVSGKVKWFNDQKGFGFITTDDGGEDLFVHQSSIRSDGFRSLALGESVEFVIESDPEGRTKAVDVTGPDETPVQGSRRGPPSSAGGGRGGYGGGRGGGGGGGGYGGGYGGGGGGGGYGGGYGGGGGGGCYKCGETGHIARDCSQGGGGGGRYGGGGGGGGGGSCYNCGESGHFARDCPSNAR 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g4210 189 PRINTS Cold shock protein signature 32 41 IPR002059 GO:0003676
Ssu1g4210 189 PRINTS Cold shock protein signature 11 26 IPR002059 GO:0003676
Ssu1g4210 189 PRINTS Cold shock protein signature 47 65 IPR002059 GO:0003676
Ssu1g4210 189 ProSitePatterns Cold-shock (CSD) domain signature. 22 41 IPR019844 -
Ssu1g4210 189 SUPERFAMILY Nucleic acid-binding proteins 7 74 IPR012340 -
Ssu1g4210 189 SMART csp_8 10 75 IPR011129 GO:0003676
Ssu1g4210 189 ProSiteProfiles Zinc finger CCHC-type profile. 171 186 IPR001878 GO:0003676|GO:0008270
Ssu1g4210 189 CDD CSP_CDS 9 74 IPR002059 GO:0003676
Ssu1g4210 189 Pfam 'Cold-shock' DNA-binding domain 10 74 IPR002059 GO:0003676
Ssu1g4210 189 Gene3D - 132 158 - -
Ssu1g4210 189 Gene3D - 166 189 - -
Ssu1g4210 189 SUPERFAMILY Retrovirus zinc finger-like domains 127 187 IPR036875 GO:0003676|GO:0008270
Ssu1g4210 189 SMART c2hcfinal6 135 151 IPR001878 GO:0003676|GO:0008270
Ssu1g4210 189 SMART c2hcfinal6 170 186 IPR001878 GO:0003676|GO:0008270
Ssu1g4210 189 Gene3D - 1 87 IPR012340 -
Ssu1g4210 189 PANTHER COLD SHOCK DOMAIN PROTEIN 2 1 187 - -
Ssu1g4210 189 PANTHER COLD SHOCK PROTEIN 1 1 187 - -
Ssu1g4210 189 MobiDBLite consensus disorder prediction 59 108 - -
Ssu1g4210 189 Pfam Zinc knuckle 170 186 IPR001878 GO:0003676|GO:0008270
Ssu1g4210 189 Pfam Zinc knuckle 135 151 IPR001878 GO:0003676|GO:0008270
Ssu1g4210 189 ProSiteProfiles Zinc finger CCHC-type profile. 136 151 IPR001878 GO:0003676|GO:0008270
Ssu1g4210 189 ProSiteProfiles Cold-shock (CSD) domain profile. 8 74 IPR002059 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g4210 Ssu-Chr1 102361695 102362264 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Ssu1g4210 CSD 3.1e-25 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g4210 - - gmx:100820359 215.698