Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g4204 ATGGAGGGTGGTGACGTTGGGCGTTGGGTGTTGGAGTTCCTTCTTCGGAACCCGCTCCTACACACTAACCTAATCAAGAAAGTGATTCGGACAATCCCCTTTTCAGACGCTGATTCCCGCCTCAAGAAGACCCTTCTCCTCAAAACCCTTCAAGACCACTTGTCCACCGTCTCCATCGCCGAACCCATTCTCGAAGCCCTCGAGCTCCTCGAGGAACTCCACCGCTGCGACGCCTCTCCGGTCACCGCCGCCATGAGCGCCGCCTACTGCGCCGTCGCGGTGGAGTGCACGCTCAAGTACCTGCAACTGGAACTCCACCACAACAACCCTGCCTACCTCAGCGCCGTGAACAGGATATGGCGCGGTAGGATTCGCCACATGAACGGTTCCGGTTCCGGTTCCGGCGAGGGAAGCCTTCTCTTATCCGAGGAGTTGAAGCGGTGGAGAAGCGACATCGAAGCTTCCCTTTCGGACTCGCAAGTGAGGGAGGGGTTGGTCTCCATCGATTCCAGAAGGGACGCCATCATCAAGCTTAGGGTTTATTTGGCCGAAGCATGGGCCAATTTGGGCCCTTCCTTTCTTCAGGTAGCGGCGTCGATGCACGCAAGACACTTGGAAGCCCAACACCAAGAGAGAGAAATTCAGAAGTGTAGGAGTGCTGCCGCTGAGCAAGTGCATTTATCAACAACTATTGAAGTCCAAAAGGTTGGGGAATGCGGTTCTTTGGAGATGCAAATGATAGTTAGGGATTCTCTACTTAATTCATCGGAAGTGAATGAGGAGGCACATGTTGAAAAACAGAGTACAGATGCAAATGTACCTTGTCCaaatagtattaataataatgaggCTGATCTGATGGAAAAGCATCAAACTTCTTTCCCCCAGAGTTGTGATCATAGGCCAAGTTTGATGGAAAGGAATACTACTGCTCGGGTTTATGAGTGGGATGATTTGATAGATGGCTTGCATGGTGGAACATCAAATCATGAAAGTAGATTTCATTTGCCTAGCCCGAAGGGGAGAAAACTTTCTCCATTGAAGAAGTATGAATCACCAGACTTtacaaaaaggagaaaaaagaaaaaatggagtCAGTTGGAAGAGGAGACTCTAAAGACTGCTGTAGACAAATTTGGCCGGGGAAATTGGAAGTTAATCCTAAATTCTCACAAAGATATATTTGAAGAGAGAACTGAAGTTGATTTGAAGGACAAGTGGAGAAACATGACGCGGTATGGGTGGAAATGA 1251 0.4772 MEGGDVGRWVLEFLLRNPLLHTNLIKKVIRTIPFSDADSRLKKTLLLKTLQDHLSTVSIAEPILEALELLEELHRCDASPVTAAMSAAYCAVAVECTLKYLQLELHHNNPAYLSAVNRIWRGRIRHMNGSGSGSGEGSLLLSEELKRWRSDIEASLSDSQVREGLVSIDSRRDAIIKLRVYLAEAWANLGPSFLQVAASMHARHLEAQHQEREIQKCRSAAAEQVHLSTTIEVQKVGECGSLEMQMIVRDSLLNSSEVNEEAHVEKQSTDANVPCPNSINNNEADLMEKHQTSFPQSCDHRPSLMERNTTARVYEWDDLIDGLHGGTSNHESRFHLPSPKGRKLSPLKKYESPDFTKRRKKKKWSQLEEETLKTAVDKFGRGNWKLILNSHKDIFEERTEVDLKDKWRNMTRYGWK 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g4204 416 PANTHER MYB TRANSCRIPTION FACTOR 4 413 - -
Ssu1g4204 416 SUPERFAMILY Homeodomain-like 358 415 IPR009057 -
Ssu1g4204 416 PANTHER MYB TRANSCRIPTION FACTOR 4 413 - -
Ssu1g4204 416 MobiDBLite consensus disorder prediction 327 348 - -
Ssu1g4204 416 SMART sant 360 413 IPR001005 -
Ssu1g4204 416 Pfam Myb-like DNA-binding domain 361 410 IPR001005 -
Ssu1g4204 416 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 356 415 IPR017930 -
Ssu1g4204 416 ProSiteProfiles Myb-like domain profile. 356 411 IPR001005 -
Ssu1g4204 416 CDD SANT_TRF 362 412 - -
Ssu1g4204 416 Gene3D - 353 414 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g4204 Ssu-Chr1 102275561 102277505 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g4204 8 410 Single Myb Histone (SMH) Gene Family AT1G15720 28.606 3.26e-28 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Ssu1g4204 Myb_DNA-binding 2.7e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g4204 - K11111 ccaj:109817184 543.888