Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g4201 ATGTCGAACCCTAAGGTCTTCTTTGACATGACGATCGGAGGCCAACCTGTGGGCCGCATAGTGATGGAGCTGTTCGCAGACACGACTCCTCGCACTGCCGAGAACTTCCGCGCCCTTTGCACTGGCGAGAAGGGCGTGGGTCGTGGCGGGAAGCCCCTCCACTACAAGGGCTCTGCCTTCCACCGTGTCATCCCCAACTTCATGTGCCAGGGCGGCGACTTCACTGCGGGGAATGGCACCGGTGGCGAGTCCATCTATGGGTCTAAGTTCGCCGACGAGAACTTCGTAAAGAAGCACACAGGTCCAGGCATTCTGTCGATGGCGAATGCGGGGCCTGGCACTAACGGGTCGCAGTTCTTTATCTGCACCGTTAAGACGGAGTGGCTGGACGGGAAGCACGTGGTGTTCGGCGAGGTGGGGGAGGGCATGGACGTGCTAAAGGAGATTGAGAAGGTGGGGTCTAGCTCCGGCAAGACCTCCAAGCCTGTGGTTGTTGCAGACTGTGGTCAACTCTCCTAG 519 0.5915 MSNPKVFFDMTIGGQPVGRIVMELFADTTPRTAENFRALCTGEKGVGRGGKPLHYKGSAFHRVIPNFMCQGGDFTAGNGTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFICTVKTEWLDGKHVVFGEVGEGMDVLKEIEKVGSSSGKTSKPVVVADCGQLS 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g4201 172 PIRSF Peptidylpro_ismrse 1 172 IPR024936 GO:0003755
Ssu1g4201 172 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 55 72 IPR020892 GO:0003755|GO:0006457
Ssu1g4201 172 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 8 169 IPR002130 GO:0000413|GO:0003755
Ssu1g4201 172 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 7 170 IPR002130 GO:0000413|GO:0003755
Ssu1g4201 172 SUPERFAMILY Cyclophilin-like 2 171 IPR029000 -
Ssu1g4201 172 CDD cyclophilin_ABH_like 4 169 - -
Ssu1g4201 172 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 118 130 IPR002130 GO:0000413|GO:0003755
Ssu1g4201 172 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 103 118 IPR002130 GO:0000413|GO:0003755
Ssu1g4201 172 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 24 39 IPR002130 GO:0000413|GO:0003755
Ssu1g4201 172 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 60 72 IPR002130 GO:0000413|GO:0003755
Ssu1g4201 172 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 131 146 IPR002130 GO:0000413|GO:0003755
Ssu1g4201 172 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 1 172 - -
Ssu1g4201 172 Gene3D - 1 172 IPR029000 -
Ssu1g4201 172 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 1 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g4201 Ssu-Chr1 102257223 102257741 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g4201 18 152 U-box Gene Family AT5G67530 49.265 1.99e-29 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g4201 K01802 - gmx:100527355 332.798