Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g4193 atggtGCTGATTGCTCATCGCTTCTCAACCTTCTCTGCAGATTGCTATGACCCGTTGGATCCAAATGGGAACATTTCCGTAACTTTTGACATTTACCAACGTACAGATAATGGATATCTGGCAAGGGTGACCCTTCAAAACTTCTATCAATATCGGCATGTAGACAAACCCGGATGGAAGCTAGGATGGACATGGGCTAACAGTGAAGTGATCTGGTCAATGAGTGGTGCCATAGCAACTGATAGAGGGAATTGCTCATCTTACAGCGGCTCTCAGATGCCACATTCCTGCAAGAAAGATCCCATCATAGTTGATCTCTCGCAAGAAGTCTCACAAAACAGGTCAGAGCATTGTTGCCGTGGTGGCCTCCTCTCTGCCTGGTCTATTGATCGTTTCAATTCATTCTCTTCATTTGAACTTGAAGTGCGCAACTTGGGACAAAACCCACTTGGACAAGCTCCTAATAATCTTACATTGATGGCCCCAGGTCCTGGTTACACTTGTAGCCCCCTTCTTGACACTGATCCCACAGTGTCCTCGGATTTTGGGGGACTAAGACAAGTTCCTGTTCTCAGAACTTGGAAGTCAACATGCGCATACTCCAGTTTCTTAGCAAACACGTCACCGGTATGCTGTGTTTCCCTCTCATCATTTTACAATCCCAGCATCACATCTTGCCGTAATTGCAGTTGTGGATGCAGAGAAGCAGATAAAAGTACAGCATCCTGCATAAGGTGTAGTTCGATTGCTCACATTTGTGTGCATGCCGTTACTTTCATTCTCTCTCCTTATTCATATTTGTGTGCTTGTTATCTAACCAGGCCTAGTGATCCCTTGACACGGTCTAATGAGGACAACacaattgaaattattgaatgcaCCGACCACATGTGCCCAGTTCGAGTCCATTGGCATTTCAAGAACAACTATATGAACCAATGGAGGGTGAAGCTTACAATTTCTAACTACTATTATGACAGAAACTACTCAAACTGGAACGTGCTGGTTCAACATCCTGGTTTCGCCCAAAAAGCAACAACTTACAGCTTCAACAGCACTAAACTTCCCACCTTTGGGCTCCAAGATGGAGTTTCCCTGTTTTGGGGGATAGATTATTACAACAGTGAGCTATTGCATTCTGATAAGGATCGAGTGGGTCTTGTGACAACAGAAATACTAATGGATAAAGATCCAAATTCTTTCACAGTACGTAATGGATGGGCATTTCCTAGAAGAATATATTTCAACGGCGAGAACTGCGAAATGCCTTTACCTGACACGTTTCCTACGTTACCAAATGGTAGCTCCAGTTTAAGACCTACTTACTGTGGTTTCAGCCTTTTATTGATCCTTTTGTTTCTTGCCTTACTACTCCTTTGGTTTTGA 1386 0.4307 MVLIAHRFSTFSADCYDPLDPNGNISVTFDIYQRTDNGYLARVTLQNFYQYRHVDKPGWKLGWTWANSEVIWSMSGAIATDRGNCSSYSGSQMPHSCKKDPIIVDLSQEVSQNRSEHCCRGGLLSAWSIDRFNSFSSFELEVRNLGQNPLGQAPNNLTLMAPGPGYTCSPLLDTDPTVSSDFGGLRQVPVLRTWKSTCAYSSFLANTSPVCCVSLSSFYNPSITSCRNCSCGCREADKSTASCIRCSSIAHICVHAVTFILSPYSYLCACYLTRPSDPLTRSNEDNTIEIIECTDHMCPVRVHWHFKNNYMNQWRVKLTISNYYYDRNYSNWNVLVQHPGFAQKATTYSFNSTKLPTFGLQDGVSLFWGIDYYNSELLHSDKDRVGLVTTEILMDKDPNSFTVRNGWAFPRRIYFNGENCEMPLPDTFPTLPNGSSSLRPTYCGFSLLLILLFLALLLLWF 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g4193 461 PIRSF COBRA 1 460 IPR006918 GO:0010215|GO:0031225
Ssu1g4193 461 Pfam COBRA-like protein 39 201 IPR006918 GO:0010215|GO:0031225
Ssu1g4193 461 PANTHER COBRA-LIKE PROTEIN 7 453 - -
Ssu1g4193 461 PANTHER PROTEIN COBRA 7 453 IPR006918 GO:0010215|GO:0031225
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g4193 Ssu-Chr1 102175140 102177507 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g4193 13 453 COBRA Gene Family AT3G02210 44.045 4.91e-130 382
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g4193 - - ccaj:109801855 768.844