Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g4190 ATGGCTATTCATTTGCCTAGTGTTTTGAATGCTAAACACATTCTTCGCCTATCTAATCTGTTTGCAAATCATGCATCACTGGATGTGCCTAAAGGGCACTTTGCTGTGTACGTAGGAGAGGGTGAAAAGAAGAGATTTGTGATACCGGTGTCATTGTTGAATCAGCCTTCGTTTCAAGAACTGCTAAGTATAGCCGAGGAAGAATTTGGCTTCAGTAATCCAATGGGTGGCCTCATAATTCCCTCATATCCCAAGTCTTTTCCACCCAACTCAATTGTGAAAAGCAAGAACCTCTTACAAGTGCTAACCAGTACTACTTTGATGGCTATTCGTTTGCCAAGTGCCTTGAGTGCTAAACACATTCTTCGCCGATCTAATCTGTTTGCAAATCATGCAGCTGCAACATCACTAGATGTGCCTAAAGGGCACTTTGCGGTGTACGTAGGAGAGGGCGAAAAGAAGAGATTTGTGATACCAGTGTCATTGTTGAATCAGCCTTCATTTCAAGAACTGTTAAGTATAGCCGAGGAAGAATTTGGCTTCACTCATCCAATGGGTGGCCTTACTATTCCCTGCACAGAAGACATTTTTGTTAACATCACCTCCGGTTTACATAGGCTATGA 624 0.4263 MAIHLPSVLNAKHILRLSNLFANHASLDVPKGHFAVYVGEGEKKRFVIPVSLLNQPSFQELLSIAEEEFGFSNPMGGLIIPSYPKSFPPNSIVKSKNLLQVLTSTTLMAIRLPSALSAKHILRRSNLFANHAAATSLDVPKGHFAVYVGEGEKKRFVIPVSLLNQPSFQELLSIAEEEFGFTHPMGGLTIPCTEDIFVNITSGLHRL 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g4190 207 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED 133 204 IPR003676 GO:0009733
Ssu1g4190 207 Pfam Auxin responsive protein 123 201 IPR003676 GO:0009733
Ssu1g4190 207 Pfam Auxin responsive protein 23 81 IPR003676 GO:0009733
Ssu1g4190 207 PANTHER - 24 81 - -
Ssu1g4190 207 PANTHER - 133 204 - -
Ssu1g4190 207 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED 24 81 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g4190 Ssu-Chr1 101798279 101800741 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g4190 28 82 Calmodulin-binding Proteins AT4G34750 52.727 1.10e-10 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g4190 - K14488 aprc:113865304 328.561