Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g4188 atggCCATTAGAAAATCAAACAAGGCTTCTCAAACCACAGTCCTGAAGCAAATCCTCAAGAGGTGTTCGAGCTTAGGAAGGAAAAATGGGTACGACGATGATGGTCTCCCTCTTGATGTCCCCAAAGGCCATTTTGCCGTCTACGTTGGGGAAAACAGAAGTAGATACATTGTTCCCATCTCGTTTTTGACTCACCCGGCGTTTCAGTCTCTCCTTCGACAAGCTGAGGAAGAATTTGGCTTCGATCACGACATGGGCCTCACTATTCCCTGCGAAGAAGTTGTTTTCCGCTCTCTAACATCCATGCTAAGATGA 315 0.4603 MAIRKSNKASQTTVLKQILKRCSSLGRKNGYDDDGLPLDVPKGHFAVYVGENRSRYIVPISFLTHPAFQSLLRQAEEEFGFDHDMGLTIPCEEVVFRSLTSMLR 104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g4188 104 Pfam Auxin responsive protein 32 103 IPR003676 GO:0009733
Ssu1g4188 104 PANTHER AUXIN-INDUCED PROTEIN 15A-LIKE 7 104 - -
Ssu1g4188 104 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 7 104 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g4188 Ssu-Chr1 101773944 101774258 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g4188 37 99 Calmodulin-binding Proteins AT3G43120 57.143 1.51e-21 81.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g4188 K14488 - gmx:100805634 199.904