Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g4185 atggtgacaCCGAACTGGCTGCGCCTATTCTCTCTTACTCGACCCCTGTCCTCCTCTTCCCTCTCCAAACCCTCTTCTTTCCCATTCTGCAACACAGCAACCACCACCAGCGCTTCTTTTCTCCACAGCAAATCTCTCCAGACCGCTCTCTCTTACGCCGCAAACAAACCCCCTTCCCCTTTGGCgtgcagaagaagaagaacaaccgAAACCCAAACCCTTTCGTCTCCGACGACGAAAAGCCGCGCGAAGAGTGCGGCGTGGTGGGCATCCACGGCGACCCCGAAGCCTCCCGCCTCTGCTACCTCGCCCTCCACGCCCTCCAGCAACCGCGGCCAGGAAGGCGCCGGCATCGTCGCCGTCCGCGACAGCGTCCTCCACTCCGTCACCGGCGTCGGCCTCGTCTCCGACGTCTTCGACGAGTCCAAGCTGTCCCAGTTGGGCGGCACCTCCGCCATCGGCCACGTCCGCTACTCCACCGCCGGCCAATCCAAACTCGCGAACGTGCAGCCCTTCGTGGCGGGCTACCGCTTCGGCTCGGTGGCGGTGGCGCACAACGGCAACTTCGTCAACTACCGGTCCCTCAGGGCGAAACTGGAGCACAACGGCTCCATCTTCAGCACCACCTCCGACACCGAGGTGGTCCTCCACCTCATCGCCACCTCCAAACACAGACCCTTCCTCTTGAGAGTCCTCGACGCCTGCGAGAACCTTCGAGGCGCGTATTCTCTCGTGTTCGTCACTGAGGACGAGAAGCTCGTCGCGGTGAGGGACCCCTTCGGGGTTTCGACCCTTGGTCATGGGAAGGAGGCCAACGGCGCTGTCGTTTTCGCCTCGGAAACCTGCGCCCTGGACTTGATAGAAGCCGCGTACGAGAGGGAGGTGTACCCGGGTGAGGTCCGTAGTGGTGGACCACACCGGAACCCAATCCCTCTGCCTCGTGCCTCGTCCGGAGCCAAGCAGTGTGTCTTCGAGCACATATACTTCGCGCTCCCGAATTCGGTTGTTTTCGGGAGGTCCGTGTATGAGTCCAGAAAAAAATTCGGGGAAATGTTGGCGACCGAGAGTCCCGTGGAGTGTGACGTTGTCATTGCGGTTCCCGATTCTGGGGTTGTGGCTGCGCTTGGTTATGCTGCCAAGGCTGGGGTCCCCTTTCAGCAGGGGCTGATTAGGTCGCACTATGTGGGGCGGACTTTTATTGAACCCTCGCAGAAGATTAGGGACTTTGGGGTGAAGCTGAAGCTGTCGCCGGTTCGCGCCGTGCTTGAAGGGAAGCGGGTTGTGGTTGTGGATGACTCCATCGTGAGAGGTACGACGTCGTCGAAGATTGTGAGGCTCATAAAGGAGGCCGGGGCCAAGGAGGTTCACGTCAGGATTGCGTGCCCGCCGATTGTTGGGTCGTGTTATTATGGGGTGGACACGCCGAGTTCGGAGGAGTTGGTATCGAACAGGATGAGTGTGGAGGAAGTGAGGGAGTTTATTGGGTCGGATTCGCTCGCTTTTCTTCCCTTGGATAGCCTGAAGATCTTGCTGGGGAGTGATGCTCCCAACTACTGCTATGCTTGCTTCTCCGGGGTGTACCCTGTTGAGCCCGCCGAGCTTAAAATGAAGAGGCTTGGTGAGTTTTGGGACGATGGCTTCAATGGGAGTCTGGAGCATATGGATCAGGAGGAGGTCAAGATTGTTAGTGTCTGA 1695 0.5817 MVTPNWLRLFSLTRPLSSSSLSKPSSFPFCNTATTTSASFLHSKSLQTALSYAANKPPSPLACRRRRTTETQTLSSPTTKSRAKSAAWWASTATPKPPASATSPSTPSSNRGQEGAGIVAVRDSVLHSVTGVGLVSDVFDESKLSQLGGTSAIGHVRYSTAGQSKLANVQPFVAGYRFGSVAVAHNGNFVNYRSLRAKLEHNGSIFSTTSDTEVVLHLIATSKHRPFLLRVLDACENLRGAYSLVFVTEDEKLVAVRDPFGVSTLGHGKEANGAVVFASETCALDLIEAAYEREVYPGEVRSGGPHRNPIPLPRASSGAKQCVFEHIYFALPNSVVFGRSVYESRKKFGEMLATESPVECDVVIAVPDSGVVAALGYAAKAGVPFQQGLIRSHYVGRTFIEPSQKIRDFGVKLKLSPVRAVLEGKRVVVVDDSIVRGTTSSKIVRLIKEAGAKEVHVRIACPPIVGSCYYGVDTPSSEELVSNRMSVEEVREFIGSDSLAFLPLDSLKILLGSDAPNYCYACFSGVYPVEPAELKMKRLGEFWDDGFNGSLEHMDQEEVKIVSV 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g4185 564 CDD PRTases_typeI 349 460 IPR000836 -
Ssu1g4185 564 ProSiteProfiles Glutamine amidotransferase type 2 domain profile. 63 306 IPR017932 -
Ssu1g4185 564 MobiDBLite consensus disorder prediction 95 113 - -
Ssu1g4185 564 TIGRFAM purF: amidophosphoribosyltransferase 111 528 IPR005854 GO:0004044|GO:0009113
Ssu1g4185 564 Gene3D - 346 510 IPR029057 -
Ssu1g4185 564 MobiDBLite consensus disorder prediction 65 88 - -
Ssu1g4185 564 SUPERFAMILY PRTase-like 322 533 IPR029057 -
Ssu1g4185 564 Hamap Amidophosphoribosyltransferase [purF]. 82 527 IPR005854 GO:0004044|GO:0009113
Ssu1g4185 564 PANTHER AMIDOPHOSPHORIBOSYLTRANSFERASE 110 555 - -
Ssu1g4185 564 MobiDBLite consensus disorder prediction 56 115 - -
Ssu1g4185 564 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 109 301 IPR029055 -
Ssu1g4185 564 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 109 528 IPR029055 -
Ssu1g4185 564 PANTHER AMIDOPHOSPHORIBOSYLTRANSFERASE 2, CHLOROPLASTIC 110 555 - -
Ssu1g4185 564 Pfam Glutamine amidotransferase domain 166 284 IPR017932 -
Ssu1g4185 564 Pfam Phosphoribosyl transferase domain 359 461 IPR000836 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g4185 Ssu-Chr1 101700086 101702326 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g4185 109 555 PRT Gene Family AT2G16570 75.276 0.0 680
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g4185 K00764 - gmx:548065 743.806