Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g4182 ATGGACGAGGATGAGCGCGACCAAGGAGGCTCGGTGGTTGCCGAGCAAACCCCAGAGCAACTGGTCGCCAGGGCCATAGCCCCCGTCAAGAAGGATTTCCTCCGTCCTCCTCCAGCTCGGGATTCCTCTCCAAACGACGACGTTTCTGTTCCCAACGATAACAAAACCTCTGCTCTGGCCAAAGAGAAGAAGTCTAAGCGTCAGCTCAAACGCGAACGTCGTCAGGAACAGAAGTCAGCACGAAACCTATGTCCGGAAATTGCGAAGACAGGGGATGTTAGTTCATGTCCTTACAAAGACAAGTGTCGTTTCAGCCATGATTTGGAAGGCTTCAAGGCACAGAAACCGGCTGATCTAGAGGGACAGTGTCCTTTCCTTAAATCTGGAGGTTCTTGCCCTTATGGGTTAGCGTGTAGATTTTCAAGTACGCATGAAGATGGTGGTGTGCCTTCTGGCAATCTGAATGGTCTGAGGAATAGTTCTGAGGTGAATGGATTGAACAAAGATGTTCAAAAGCTTTTGTGGAAAAACAAGATGAGCTTCTCCAAGGCAGATGCCAAACTCAAAAGTCTTGGCCTCGTGGGACTCTCTAAGTCAAAAGGAATGACTTGGAAAATAAAGATGGAGGTGACACTGGTTCAAATAAGCATGATCATTCTGATGACAGTGCCTCTTGTGTTGTTACCTCTGACTCAGGTTCTAAGTTAG 708 0.4802 MDEDERDQGGSVVAEQTPEQLVARAIAPVKKDFLRPPPARDSSPNDDVSVPNDNKTSALAKEKKSKRQLKRERRQEQKSARNLCPEIAKTGDVSSCPYKDKCRFSHDLEGFKAQKPADLEGQCPFLKSGGSCPYGLACRFSSTHEDGGVPSGNLNGLRNSSEVNGLNKDVQKLLWKNKMSFSKADAKLKSLGLVGLSKSKGMTWKIKMEVTLVQISMIILMTVPLVLLPLTQVLS 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g4182 235 MobiDBLite consensus disorder prediction 1 83 - -
Ssu1g4182 235 SMART c3hfinal6 79 108 IPR000571 GO:0046872
Ssu1g4182 235 SMART c3hfinal6 119 146 IPR000571 GO:0046872
Ssu1g4182 235 Coils Coil 52 79 - -
Ssu1g4182 235 Gene3D - 73 151 - -
Ssu1g4182 235 PANTHER TRNA-DIHYDROURIDINE(47) SYNTHASE [NAD(P)(+)]-LIKE 21 193 - -
Ssu1g4182 235 ProSiteProfiles Zinc finger C3H1-type profile. 78 109 IPR000571 GO:0046872
Ssu1g4182 235 PANTHER TRNA-DIHYDROURIDINE(47) SYNTHASE [NAD(P)(+)]-LIKE 21 193 - -
Ssu1g4182 235 ProSiteProfiles Zinc finger C3H1-type profile. 122 147 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g4182 Ssu-Chr1 101692929 101694369 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Ssu1g4182 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g4182 K05544 - gmx:100783494 318.546