Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g4180 ATGGCTGCGCCTATTCTCTCTTACTCGACCCTGTCCTCCTCTTCCCTCTCCAAACCCTCTTCTTTCCCATTCTGCAACACAGCAACCACCACCAGCGCTTCTTTTCTCCACAGCAAATCTCTCCAGACCGCTCTCTCTTACGCCGCAAACAAACCCCCTTCCCCTTTGGCGTGCAGAAACAACCGAAACCCAAACCCTTTCGTCTCCGACGACGAAAAGCCGCGCGAAGAGTGCGGCGTGGTGGGCATCCACGGCGACCCCGAAGCCTCCCGCCTCTGCTACCTCGCCCTCCACGCCCTCCAGCACCGCGGCCAGGAAGGCGCCGGCATCGTCGCCGTCCGCGACAGCGTCCTCCACTCCGTCACCGGCGTCGGCCTCGTCTCCGACGTCTTCGACGAGTCCAAGCTGTCCCAGTTGGGCGGCACCTCCGCCATCGGCCACGTCCGCTACTCTACCGCCGGCCAATCCAAACTCGCCAACGTGCAGCCCTTCGTGGCGGGCTACCGCTTCGGCTCGGTGGCGGTGGCGCACAACGGCAACTTCGTCAACTACCGGTCCCTCAGGGCGAAACTGGAGCACAACGGCTCCATCTTCAGCACGACCTCCGACACCGAGGTGGTCCTCCACCTCATCGCCACCTCCAAACACAGACCCTTCCTCTTGAGAGTCCTCGACGCCTGCGAGAACCTTCGAGGCGCGTATTCCCTCGTGTTCGTCACTGAGGACGAGAAGCTCGTCGCGGTGAGGGACCCCTTCGGGTTTCGACCCTTGGTCATGGGAAGGAGGCCAAACGGCGCTGTCGTTTTCGCCTCGGAAACCTGCGCCCTGGACTTGATAGAAGCCGCGTACGAGAGGGAGGTGTACCCGGGTGAGGTCGTAGTGGTGGACCACACCGGAACCCAATCCCTCTGCCTCGTGCCTCGTCCGGAGCCAAAGCAGTGTGTCTTCGAGCACATATACTTCGCGCTCCCGAATTCGGTTGTTTTCGGGAGGTCCGTGTATGAGTCTAGAAAAAAATTCGGGGAAATGTTGGCGACCGAGAGTCCCGTGGAGTGTGACGTTGTCATAGCGGTTCCCGATTCTGGGGTTGTGGCTGCGCTTGGTTATGCTGCCAAGGCTGGGGTCCCCTTTCAGCAGGGGCTGATTAGGTCGCACTATGTGGGGCGGACTTTTATTGAACCCTCGCAGAAGATTAGGGACTTTGGGGTGAAGCTGAAGCTGTCGCCGGTTCGCGCCGTGCTTGAGGGAGCGGGTACGACGTCGTCGAAGATTGTGAGGCTCATAAAGGAGGCCGGGGCCAAGGAGGTTCACGTCAGGATTGCGTGCCCGCCGATTGTTGGGTCGTGTTATTATGGGGTGGACACGCCGAGTTCGGAGGAGTTGGTATCGAACAGGATGAGTGTGGAGGAAGTGAGGGAGTTTATTGGGTCGGATTCGCTCGCTTTTCTTCCCTTGGATAGCCTGAAGATCTTGCTCGGGAGTGATGCTCCCAACTACTGCTATGCTTGCTTCTCCGGGATGTACCCTGTTGAGCCCGCCGAGCTCAAAATGAACAGGCTTGGTGAGTTTTGGGACGATGGCTTCAATGGGAGTCTGGAGCATATGGATCAGGAGGAGGTCAAGATTGAGTTCTGGATTCTGAAGGCCGATGCTTAA 1656 0.5912 MAAPILSYSTLSSSSLSKPSSFPFCNTATTTSASFLHSKSLQTALSYAANKPPSPLACRNNRNPNPFVSDDEKPREECGVVGIHGDPEASRLCYLALHALQHRGQEGAGIVAVRDSVLHSVTGVGLVSDVFDESKLSQLGGTSAIGHVRYSTAGQSKLANVQPFVAGYRFGSVAVAHNGNFVNYRSLRAKLEHNGSIFSTTSDTEVVLHLIATSKHRPFLLRVLDACENLRGAYSLVFVTEDEKLVAVRDPFGFRPLVMGRRPNGAVVFASETCALDLIEAAYEREVYPGEVVVVDHTGTQSLCLVPRPEPKQCVFEHIYFALPNSVVFGRSVYESRKKFGEMLATESPVECDVVIAVPDSGVVAALGYAAKAGVPFQQGLIRSHYVGRTFIEPSQKIRDFGVKLKLSPVRAVLEGAGTTSSKIVRLIKEAGAKEVHVRIACPPIVGSCYYGVDTPSSEELVSNRMSVEEVREFIGSDSLAFLPLDSLKILLGSDAPNYCYACFSGMYPVEPAELKMNRLGEFWDDGFNGSLEHMDQEEVKIEFWILKADA 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g4180 551 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 78 509 IPR029055 -
Ssu1g4180 551 Gene3D - 338 491 IPR029057 -
Ssu1g4180 551 SUPERFAMILY PRTase-like 314 514 IPR029057 -
Ssu1g4180 551 ProSiteProfiles Glutamine amidotransferase type 2 domain profile. 78 298 IPR017932 -
Ssu1g4180 551 PANTHER AMIDOPHOSPHORIBOSYLTRANSFERASE 2, CHLOROPLASTIC 43 536 - -
Ssu1g4180 551 Pfam Glutamine amidotransferase domain 158 276 IPR017932 -
Ssu1g4180 551 Hamap Amidophosphoribosyltransferase [purF]. 77 508 IPR005854 GO:0004044|GO:0009113
Ssu1g4180 551 PANTHER AMIDOPHOSPHORIBOSYLTRANSFERASE 43 536 - -
Ssu1g4180 551 CDD GPATase_N 78 329 IPR035584 -
Ssu1g4180 551 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 78 301 IPR029055 -
Ssu1g4180 551 CDD PRTases_typeI 341 441 IPR000836 -
Ssu1g4180 551 TIGRFAM purF: amidophosphoribosyltransferase 78 509 IPR005854 GO:0004044|GO:0009113
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g4180 Ssu-Chr1 101614851 101616616 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g4180 70 541 PRT Gene Family AT2G16570 77.526 0.0 763
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g4180 K00764 - gmx:548065 850.121