Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g4177 ATGGACGAGGATGAGCGCGACCAAGGAGGCTCGGTGGTTGCCGAGCAAACCCCAGAGCAACTGGTCGCCAGGGCCATAGCCCCCGTCAAGAAGGATTTCCTCCGTCCTCCTCCAGCTCGGGATTCCTCTCCAAACGACGACGTTTCTGTTCCCAACGATAACAAAACCTCTGCTCTGGCCAAGGAGAAGAAGTCTAAGCGCCAGCTCAAACGCGAACGTCGTCAGGAACAGAAGTCAGCACGAAACCTATGTCCGGAAATTGCGAAGACAGGGGATGTTAGTTCATGTCCTTACAAAGACAAGTGTCGTTTCAGCCATGATTTGGAAGGCTTCAAGGCACAGAAACCGGCTGATCTAGAGGGACAGTGTCCTTTCCTTAAATCTGGAGGTTCTTGCCCTTATGGGTTAGCGTGTAGATTTTCAAGTACGCATGAAGATGGTGGTGTGCCTTCTGGCAATCTGAATGGTCTCAGGAATAGTTCTGAGGTGAATGGATTGAACAAAGATGTTCAAAAGCTTTTGTGGAAAAACAAGATGAGCTTCTCCAAGGCAGATGCCAAACTCAAAAGTCTTGGCCTCGTGGGACTCTCTAAGTCAAAAAGGAATGACTTGGAAAATAAAGATGGAGGTGACACTGGTTCAAATAAGCATGATCATTCTGATGACAGTGCCTCTTGTGTTGTTACCTCTGACTCAGGTTCTAAGTTAGAATGCTCTGCAGAAGTTATGAAAGATGATGACAATGACATAGATGGAAAATCTGAATCTGATGTACTTTGTCCccagaagagaagaaaaactgAAGAAAATTATGGTCCTAAGGAGGCAGAAAATGAAGGTGTGACTGATACTGAGCAAATTGTTGAAAGAAGTTGCATAAAAACTGAACAAGAAGCTGGAACTGATGCTATAATCCCAGAAACTGATCTAAGCCTGAAGCTGCACTCACGTGAAAAGAAGCTTATTGATTTCAGGGAGAAGTTGTATCTTGCACCCTTGACCACTGTTGGAATCTCCCTTTCCGGAGAGTTTGCAAAGTATTAG 1044 0.4464 MDEDERDQGGSVVAEQTPEQLVARAIAPVKKDFLRPPPARDSSPNDDVSVPNDNKTSALAKEKKSKRQLKRERRQEQKSARNLCPEIAKTGDVSSCPYKDKCRFSHDLEGFKAQKPADLEGQCPFLKSGGSCPYGLACRFSSTHEDGGVPSGNLNGLRNSSEVNGLNKDVQKLLWKNKMSFSKADAKLKSLGLVGLSKSKRNDLENKDGGDTGSNKHDHSDDSASCVVTSDSGSKLECSAEVMKDDDNDIDGKSESDVLCPQKRRKTEENYGPKEAENEGVTDTEQIVERSCIKTEQEAGTDAIIPETDLSLKLHSREKKLIDFREKLYLAPLTTVGISLSGEFAKY 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g4177 347 SMART c3hfinal6 79 108 IPR000571 GO:0046872
Ssu1g4177 347 SMART c3hfinal6 119 146 IPR000571 GO:0046872
Ssu1g4177 347 MobiDBLite consensus disorder prediction 200 224 - -
Ssu1g4177 347 Coils Coil 52 79 - -
Ssu1g4177 347 MobiDBLite consensus disorder prediction 200 230 - -
Ssu1g4177 347 PANTHER TRNA-DIHYDROURIDINE(47) SYNTHASE [NAD(P)(+)]-LIKE 22 337 - -
Ssu1g4177 347 MobiDBLite consensus disorder prediction 1 86 - -
Ssu1g4177 347 Gene3D - 73 150 - -
Ssu1g4177 347 PANTHER TRNA-DIHYDROURIDINE(47) SYNTHASE [NAD(P)(+)]-LIKE 22 337 - -
Ssu1g4177 347 MobiDBLite consensus disorder prediction 242 284 - -
Ssu1g4177 347 ProSiteProfiles Zinc finger C3H1-type profile. 78 109 IPR000571 GO:0046872
Ssu1g4177 347 ProSiteProfiles Zinc finger C3H1-type profile. 122 147 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g4177 Ssu-Chr1 101607846 101609737 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Ssu1g4177 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g4177 K05544 - gmx:100783494 550.051