Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g4176 ATGTTGTTGCATATGAGGCCTGAACCTGGTTTGGAGGCCCATCGCATTAAGAGAATTGGAAATGTCGGGTCATTTGACCCGCCCAATTTGACATTCAAGTCAAGTCGGGTACAGGAACGTGAGATTATAAAGGGAATGGAACGTCGAGACCCCACGTTTCTTCACGGCAACAGAATCATCGAGACACGGAGATCGGCCTCTCCCAAGGATTTGAATTCCTCAGATCTATCCGACGTCGTTGCAGATCCACCAACGCTCATGGCTGCCTTCAGCGGTGATGAAACGGCACCGTTTTTCGGCTTCCTTGGAGCCGCAGCTGCCCTCGTCTTCTCCTGTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTGGGCGTGGCTTCCATGGGTGTGATGAGACCCGAGCTGGTGATGAAGTCTATTGTTCCTGTTGTCATGGCTGGAGTTTTGGGTATTTATGGCCTTATTATTGCTGTTATAATCAGCACCGGTATTAATCCAAGGCCAAATCTTATTACCTTTTTGATGGTTATGCACATCTCTCCTCTGGTCTTGCCTGTGGCTTGGCTGGCCTCTCTGCTGGCATGGCTATTGGTATTGTTGGTGATGCTGGTGTTAGGTAGGACAGTTCAATATGTTTCTAGCTCTTTCAACCGTCAAATAGCAGCCAATGCACAGCAGCCAAAACTTTTTGTTGGAATGATTCTCATCCTCATTTTTGCTGAAGCTCTTGCCCTTTATGGTCTCATTGTTGGTATTATCCTGTCTTCTCGTGCTGGCCAGTCTAGAGCCGAATGA 798 0.4862 MLLHMRPEPGLEAHRIKRIGNVGSFDPPNLTFKSSRVQEREIIKGMERRDPTFLHGNRIIETRRSASPKDLNSSDLSDVVADPPTLMAAFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPRPNLITFLMVMHISPLVLPVAWLASLLAWLLVLLVMLVLGRTVQYVSSSFNRQIAANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAE 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g4176 265 CDD ATP-synt_Vo_c_ATP6C_rpt2 223 256 - -
Ssu1g4176 265 Gene3D - 96 262 IPR035921 -
Ssu1g4176 265 TIGRFAM V_ATP_synt_C: V-type ATPase, C subunit 98 181 IPR011555 GO:0033179|GO:0046961|GO:1902600
Ssu1g4176 265 CDD ATP-synt_Vo_c_ATP6C_rpt1 98 165 - -
Ssu1g4176 265 SUPERFAMILY F1F0 ATP synthase subunit C 99 162 IPR035921 -
Ssu1g4176 265 PRINTS Vacuolar ATP synthase 16kDa subunit signature 141 165 IPR000245 GO:0033179|GO:0046961|GO:1902600
Ssu1g4176 265 PRINTS Vacuolar ATP synthase 16kDa subunit signature 115 139 IPR000245 GO:0033179|GO:0046961|GO:1902600
Ssu1g4176 265 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 88 265 - -
Ssu1g4176 265 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 88 265 - -
Ssu1g4176 265 Pfam ATP synthase subunit C 220 255 IPR002379 GO:0015078|GO:0033177|GO:1902600
Ssu1g4176 265 Pfam ATP synthase subunit C 102 161 IPR002379 GO:0015078|GO:0033177|GO:1902600
Ssu1g4176 265 SUPERFAMILY F1F0 ATP synthase subunit C 198 256 IPR035921 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g4176 Ssu-Chr1 101596766 101599064 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g4176 87 265 Primary Pumps ATPases(2) AT2G16510 72.778 6.89e-77 229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g4176 K02155 - gmx:100812380 215.312