Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Ssu1g4165 | ATGGACGCCGAGGACGAGGAAGTTCCACAAACTACATCTCCTCCTCCACTCCAACAACACTCTGATGCACAATGCCACACCGACCTGCAAAATCTCCCCTACGGCGGAGACCTTGACGGTGTAGCCGGCGCGGTTGTCGGTGAAGCTGTGACGGCGACGACGAGGGAGGCTGTGGCGGTTGAGGCCGATGCGACAACGGAGACGGTGGCGGTGTCCGACGAGGGCGCTGAAACGCAAGTGACGGACGCAGCGGGTGACGAGATAATTGAGGAGAAGGGGAACGAAGGAACCGATGTGGATGACGACGTGGCTTTGGAGACGGGGAACGTGGAAGAGGAAGCGAATTTGACAATTGATGCGGAAGAGGACGAAATTGGGGACAAGAAGCCAAATGAAGATGCTTTgatggaagaagaagaggaacacCAGCAAGGAGAGGacgatgatgaagaagaagaagaagaacaacaacaagaaggagaggaggaagaagaagaggaacagcagctaggagaagaagaagatgctGATGCTGATGGTGGAATGGCAGTAGCAGAAGATGCAgaggagaaggaggagaagagtGCTACTGCGAGTGGTGGGAAGAGGAAGCGTGGGGCTGGGAAGAATGCTAAGGCTACAGGGAGAGTTGCATCCAGGAAAAAGATGGAGGAAGACGTTTGTTTCATTTGCTTCGACGGGGGTGACCTTGTACTTTGTGACCGCAGGGGATGCCCCAAGGCTTACCATCCTTCCTGTGTTAATCGTGATGAGGCCTTCTTTCGAGCCAAGGGAAAGTGGAATTGCGGTTGGCATCTTTGCAGCAACTGTGAGAGGAATGCATACTATATGTGCTATACATGTACGTTTTCTTTGTGCAAGGGATGCATCAAAGACGCTGTTATCTTATGTGTTAGGGGAAACAAGGGCTTTTGTGAGACATGCATGAGAACCGTAATGTTGATTGAACAGAACGAGCAGGGAAACAATGTGGGACAAATAGATTTTGATGACAAAAACAGCTGGGAGTATCTCTTCAAGGACTACTACATAGatctaaaagaaaaactatcTCTAACATTTGATGAACTCACTCAAGCTAAAAACCCTTGGAAGGGATCTGATATGCTTCATTCTAAAGAGGAATCACCGGATGAACTTTTTGATGCTAGTAATGATAGAGGATCAGATTCAGATAGCTCCTATGAGAATGTAGATTTGAGTCATTCTAAAAGAAGAAAGGCCAAGAAACGGGCAAAGTCCCATTCCAAAGAAGGAAATTCATACAGTGCAGTGACAATGCTTGGTGCTGATGGTCCATCTGGAGCTGACAGCTCTGAGTGGGCTTCAAGAGAGCTTTTAGAGTTTGTTATGCACATGAGAAATGGTGACAAATCTGTTTTATCTCAGTTTGATGTGCAAGCTCTTTTGCTAgagtatattaaaagaaataagctTCGAGATCCTCGCCGAAAAAGCCAGATTATTTGTGATGCCAGACTTCAAAATCTATTTGGTAAACCAAGAGTGGGACATTTTGAAATGTTAAAGCTTCTTGAATCCCATTTCCTTCTAAAAGAGGATTCTCAGGCTGAAGATCTGCAGGGAAGTGTTGTTGACACTGAAATTAGTCATTTGGAAGGTGATGGCAATCCCAATTCATATACGAAAGCTGGCAAAGATAAGAGACGTAAAAATCGTAAAAAGGGTGATGAGAGAGGCCTTCAAACTAATGTTGATGATTATGCAGCCATTGATAaccataatattaatttaatttatctaagaCGTAATTTGATGGAAGATCTACTTGAAGATACAGAGAAGTTTCATGATAAAGTTGTTGGTTCTTTTGTGAGAATAAGAATTTCTGGTAGTGGTCAGAAGCAAGACTTGTATAGGCTGGTCCAAGTTGTAGGTACATGCAAAGCAGCAGAGCCATATAAAGTTGGTAAAAGGATGACAGATATCTTGCTagaaatcttaaatttaaaaaagacagAGATTGTATCAATCGATATTATCTCAAATCAGGAGTTCACAGAGGATGAATGCAAGCGTCTCCGCCAAAGCATAAAGTGTGGCCTCATAAATCGGCTAACTGTGGGTGACATTCAGGACAAAGCATTGGTGCTTCAGGCAGTTAGAGTAAAAGATTGGCTGGAAACAGAGATAGTGAGGCTGAGTCATCTCCGTGATAGAGCTAGTGAGAAAGGACGCAGAAAAGAGCTCAGAGAATGTGTAGAGAAATTGCAGCTTTTGAAAACTCCTGAAGAACGTCAACGTAGGTTGGAGGAAATTCCAGAGATACATGTGGATCCAAACATGGATCCAAGTTATGAGtctgaagaagatgaagatgaaatgGATGATAAAAGACAAGAAAACTACATGAGACCTAGAGGGTCCTTTGGAAGGAGAGGGAGAGATATTGTTTCTCCTAGAAGTGGTTCTACTTCAAATGATTCTTGGAGTGGAACGAGGAATTATTCTAATGTGAATCAGGAACTCAGCAGAAATTTGTCTAATAAGGGATTTTCAATCAAAGGTGATAATGCTTCTAATGCTAATGAGGTACTAAATGATGTTCACTTGCACCAGGGAAGAGATAGGGAATCACAACTATCTAATAGCTGGGAGAGGCAAAAGCTATCTTCAAGCTTGGAAAGTGGTGCTAAAAATACCCAACCATTGGTAACATCTGAGTCTTTCTCTATTGCTGTATTAGAAGCTTCTGCAGCACCATCTTCTGCCGGAATAACTCCTCCAGCTGTGAAAATTAATGAAACTGAAAAGATGTGGCATTACCAGGATCCATCCGGAAAAGTTCAGGGACCGTTTTCCATGGTGCAGCTACGCAAATGGAGTAACACAGGATACTTTCCTGCTGATTTGAGGATTTGGAGAACAACTGAGAAGCAAGATGATTCTATACTCTTAACAGATGCCTTAGCAGGGAGTTTTTCTAAGGAACCATCAATGGTGGATAAGGCTCAAACGGTGCATGATTTACCTTACCCATCCTCGTACTCTAGGAAGTCTGCACCACAAGGTATAGAAGGTCAAGTTGGAGAAAGACCAACATTTGATCAAAATAGTGGATCTTGGAATTCGCATAGTACTCAGGGTTCTCCGGGACAAACCACAGGAGGAAGTTGGAGAACTAAAGATAATATGAATTCTTTAGCAAATAAAACATCTCAATTGGCAGTTGAGGTCCCCAGGAACCCTGCAAATGGCTGGAGTTCTGATGCTGGTGTTAGAAATGAAGCAACAAATCTTCCTTCACCTACTCCCCAGACTACTCCTGGTGGAACTAAGGGGCAggcttttgaaaataaatggtCACCCACACCTGTCCAGTTGCCTGGGTCTCTCATAGGAAATTCATTCCCAGGCAGTCATGGAGGTTTGCAGGCCTCTGTGGTAGTGCACCCAGAGCATGCTGTACAAAATGCTGAAAAAGGCTCTGGTTTACAACCTGGTATTAGTTCAGCTTCTACAGATGATACTACACAGTTACATTCTCTAGGAACAGCCGTGGCACCTGTTCTGGCTTCAGGGGTTGATATAAAAATGGCAGGTGCAAATATGCAAAACCAGATTGTTAGCCACAACTCTCATGCTGAAGCTCAAGGGTGGGGTTCTGCTGGGGTTTCAAAGCCTGAACCACAGGGCTGGGGAGGTACATCATCTCAAAGGATAGAACCAAATAATCCTGCTACTATGCCTGCCCTGCCAGCTTCCCATGGCCCCTGGGCTGATGCTTCGTCTGTCCAGAATACTGCCTCATTTAGCACCGGAAATCCAACTGGGAGTTTACCCACACCTGGATTTCTGGGCATGACTACAGCTGAGCCTTGGAGACCACCAGCAGCTTCAAGCAATCAGTCAAACATTACAGCTCCATCTCCAGCTCCCCCCAGTATGCCTTGGGGTATGGGCATGCCAGGAAATCAGAATATGAACTGGGGTGGGGTGGTACCACCTGCCAATTTGAACGTAAACTGGATGCCTGCACAGGTGCCAGCACCTGGAAATTCAAATCCAGGATGGGCTGCTCCTAGTCAGGGGCTACCTCCAATGAATGCAGTTGGCTGGGTTGGACCTGGTCAAGGACGTTCCCATGTAAATGCAAATGCAGGTTGGGTTGGGCCTGGTCAGGGGCTAGCACCTGGAAGTGCCAATCCTGGTTGGGCTGCATCTGCCGGAAATCCAGGCATGTGGGGAAGTGAGCAAAGTCATAATGGAGACAGGTTCCCCAACCAAGGGGATCGCGGCACCCATGGTAGAGATTCTGGTTATGGAGGTAAATCTTGGAACAGGCAGTCATCATTTGGCAGCGGAGGCAGAGGAGGTTCTTCCAGGCCTCCTTTTGGGGGACAAAGAGGAGTCTGCAAGTATCATGAGAGTGGACATTGCAGGAAGGGGGCTTCTTGTGATTTTCTACACACTTAG | 4458 | 0.4338 | MDAEDEEVPQTTSPPPLQQHSDAQCHTDLQNLPYGGDLDGVAGAVVGEAVTATTREAVAVEADATTETVAVSDEGAETQVTDAAGDEIIEEKGNEGTDVDDDVALETGNVEEEANLTIDAEEDEIGDKKPNEDALMEEEEEHQQGEDDDEEEEEEQQQEGEEEEEEEQQLGEEEDADADGGMAVAEDAEEKEEKSATASGGKRKRGAGKNAKATGRVASRKKMEEDVCFICFDGGDLVLCDRRGCPKAYHPSCVNRDEAFFRAKGKWNCGWHLCSNCERNAYYMCYTCTFSLCKGCIKDAVILCVRGNKGFCETCMRTVMLIEQNEQGNNVGQIDFDDKNSWEYLFKDYYIDLKEKLSLTFDELTQAKNPWKGSDMLHSKEESPDELFDASNDRGSDSDSSYENVDLSHSKRRKAKKRAKSHSKEGNSYSAVTMLGADGPSGADSSEWASRELLEFVMHMRNGDKSVLSQFDVQALLLEYIKRNKLRDPRRKSQIICDARLQNLFGKPRVGHFEMLKLLESHFLLKEDSQAEDLQGSVVDTEISHLEGDGNPNSYTKAGKDKRRKNRKKGDERGLQTNVDDYAAIDNHNINLIYLRRNLMEDLLEDTEKFHDKVVGSFVRIRISGSGQKQDLYRLVQVVGTCKAAEPYKVGKRMTDILLEILNLKKTEIVSIDIISNQEFTEDECKRLRQSIKCGLINRLTVGDIQDKALVLQAVRVKDWLETEIVRLSHLRDRASEKGRRKELRECVEKLQLLKTPEERQRRLEEIPEIHVDPNMDPSYESEEDEDEMDDKRQENYMRPRGSFGRRGRDIVSPRSGSTSNDSWSGTRNYSNVNQELSRNLSNKGFSIKGDNASNANEVLNDVHLHQGRDRESQLSNSWERQKLSSSLESGAKNTQPLVTSESFSIAVLEASAAPSSAGITPPAVKINETEKMWHYQDPSGKVQGPFSMVQLRKWSNTGYFPADLRIWRTTEKQDDSILLTDALAGSFSKEPSMVDKAQTVHDLPYPSSYSRKSAPQGIEGQVGERPTFDQNSGSWNSHSTQGSPGQTTGGSWRTKDNMNSLANKTSQLAVEVPRNPANGWSSDAGVRNEATNLPSPTPQTTPGGTKGQAFENKWSPTPVQLPGSLIGNSFPGSHGGLQASVVVHPEHAVQNAEKGSGLQPGISSASTDDTTQLHSLGTAVAPVLASGVDIKMAGANMQNQIVSHNSHAEAQGWGSAGVSKPEPQGWGGTSSQRIEPNNPATMPALPASHGPWADASSVQNTASFSTGNPTGSLPTPGFLGMTTAEPWRPPAASSNQSNITAPSPAPPSMPWGMGMPGNQNMNWGGVVPPANLNVNWMPAQVPAPGNSNPGWAAPSQGLPPMNAVGWVGPGQGRSHVNANAGWVGPGQGLAPGSANPGWAASAGNPGMWGSEQSHNGDRFPNQGDRGTHGRDSGYGGKSWNRQSSFGSGGRGGSSRPPFGGQRGVCKYHESGHCRKGASCDFLHT | 1485 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Ssu1g4165 | 1485 | MobiDBLite | consensus disorder prediction | 792 | 808 | - | - | |
| Ssu1g4165 | 1485 | MobiDBLite | consensus disorder prediction | 372 | 436 | - | - | |
| Ssu1g4165 | 1485 | MobiDBLite | consensus disorder prediction | 542 | 573 | - | - | |
| Ssu1g4165 | 1485 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 215 | 319 | IPR013083 | - | |
| Ssu1g4165 | 1485 | CDD | SWIB-MDM2_like | 448 | 523 | - | - | |
| Ssu1g4165 | 1485 | MobiDBLite | consensus disorder prediction | 813 | 830 | - | - | |
| Ssu1g4165 | 1485 | SMART | PHD_3 | 227 | 273 | IPR001965 | - | |
| Ssu1g4165 | 1485 | ProSiteProfiles | Zinc finger PHD-type profile. | 225 | 291 | IPR019787 | - | |
| Ssu1g4165 | 1485 | Pfam | GYF domain | 934 | 974 | IPR003169 | GO:0005515 | |
| Ssu1g4165 | 1485 | ProSiteProfiles | Plus3 domain profile. | 584 | 717 | IPR004343 | GO:0003677 | |
| Ssu1g4165 | 1485 | MobiDBLite | consensus disorder prediction | 1 | 32 | - | - | |
| Ssu1g4165 | 1485 | MobiDBLite | consensus disorder prediction | 1407 | 1421 | - | - | |
| Ssu1g4165 | 1485 | CDD | GYF | 931 | 986 | IPR003169 | GO:0005515 | |
| Ssu1g4165 | 1485 | SUPERFAMILY | FYVE/PHD zinc finger | 224 | 277 | IPR011011 | - | |
| Ssu1g4165 | 1485 | MobiDBLite | consensus disorder prediction | 1210 | 1307 | - | - | |
| Ssu1g4165 | 1485 | MobiDBLite | consensus disorder prediction | 1005 | 1112 | - | - | |
| Ssu1g4165 | 1485 | MobiDBLite | consensus disorder prediction | 121 | 136 | - | - | |
| Ssu1g4165 | 1485 | MobiDBLite | consensus disorder prediction | 1289 | 1303 | - | - | |
| Ssu1g4165 | 1485 | SMART | swib_2 | 457 | 528 | IPR019835 | - | |
| Ssu1g4165 | 1485 | ProSiteProfiles | Zinc finger C3H1-type profile. | 1460 | 1485 | IPR000571 | GO:0046872 | |
| Ssu1g4165 | 1485 | MobiDBLite | consensus disorder prediction | 759 | 778 | - | - | |
| Ssu1g4165 | 1485 | MobiDBLite | consensus disorder prediction | 878 | 894 | - | - | |
| Ssu1g4165 | 1485 | MobiDBLite | consensus disorder prediction | 867 | 894 | - | - | |
| Ssu1g4165 | 1485 | MobiDBLite | consensus disorder prediction | 184 | 200 | - | - | |
| Ssu1g4165 | 1485 | Pfam | SWIB/MDM2 domain | 450 | 523 | IPR003121 | - | |
| Ssu1g4165 | 1485 | MobiDBLite | consensus disorder prediction | 137 | 183 | - | - | |
| Ssu1g4165 | 1485 | MobiDBLite | consensus disorder prediction | 1437 | 1451 | - | - | |
| Ssu1g4165 | 1485 | MobiDBLite | consensus disorder prediction | 93 | 108 | - | - | |
| Ssu1g4165 | 1485 | SMART | rtf1 | 584 | 694 | IPR004343 | GO:0003677 | |
| Ssu1g4165 | 1485 | MobiDBLite | consensus disorder prediction | 1254 | 1278 | - | - | |
| Ssu1g4165 | 1485 | SUPERFAMILY | SWIB/MDM2 domain | 447 | 524 | IPR036885 | - | |
| Ssu1g4165 | 1485 | MobiDBLite | consensus disorder prediction | 1225 | 1239 | - | - | |
| Ssu1g4165 | 1485 | MobiDBLite | consensus disorder prediction | 759 | 830 | - | - | |
| Ssu1g4165 | 1485 | SUPERFAMILY | GYF domain | 923 | 984 | IPR035445 | - | |
| Ssu1g4165 | 1485 | ProSitePatterns | Zinc finger PHD-type signature. | 228 | 288 | IPR019786 | - | |
| Ssu1g4165 | 1485 | SUPERFAMILY | Plus3-like | 585 | 713 | IPR036128 | GO:0003677 | |
| Ssu1g4165 | 1485 | MobiDBLite | consensus disorder prediction | 1026 | 1073 | - | - | |
| Ssu1g4165 | 1485 | MobiDBLite | consensus disorder prediction | 11 | 28 | - | - | |
| Ssu1g4165 | 1485 | Coils | Coil | 135 | 173 | - | - | |
| Ssu1g4165 | 1485 | Pfam | Plus-3 domain | 589 | 692 | IPR004343 | GO:0003677 | |
| Ssu1g4165 | 1485 | ProSiteProfiles | GYF domain profile. | 931 | 985 | IPR003169 | GO:0005515 | |
| Ssu1g4165 | 1485 | MobiDBLite | consensus disorder prediction | 374 | 393 | - | - | |
| Ssu1g4165 | 1485 | CDD | Bbox1 | 273 | 299 | - | - | |
| Ssu1g4165 | 1485 | ProSiteProfiles | SWIB/MDM2 domain profile. | 442 | 525 | IPR003121 | - | |
| Ssu1g4165 | 1485 | Gene3D | - | 586 | 714 | IPR036128 | GO:0003677 | |
| Ssu1g4165 | 1485 | Gene3D | - | 932 | 991 | IPR035445 | - | |
| Ssu1g4165 | 1485 | MobiDBLite | consensus disorder prediction | 1082 | 1112 | - | - | |
| Ssu1g4165 | 1485 | Gene3D | SWIB/MDM2 domain | 440 | 533 | IPR036885 | - | |
| Ssu1g4165 | 1485 | MobiDBLite | consensus disorder prediction | 65 | 216 | - | - | |
| Ssu1g4165 | 1485 | SMART | gyf_5 | 932 | 987 | IPR003169 | GO:0005515 | |
| Ssu1g4165 | 1485 | PANTHER | UNCHARACTERIZED | 48 | 1485 | - | - | |
| Ssu1g4165 | 1485 | MobiDBLite | consensus disorder prediction | 1388 | 1464 | - | - | |
| Ssu1g4165 | 1485 | CDD | PHD5_NSD | 227 | 272 | - | - | |
| Ssu1g4165 | 1485 | PANTHER | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 19 | 48 | 1485 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Ssu1g4165 | Ssu-Chr1 | 101372598 | 101397553 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Ssu1g4165 | 225 | 312 | PHD Transcription Factor Family | AT5G36670 | 31.000 | 1.32e-06 | 51.2 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TR | SWI/SNF-BAF60b | Ssu1g4165 | Plus-3 | 4.5e-24 | No_clan |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Ssu1g4165 | - | - | gmx:100815079 | 2332.75 |