Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g4156 ATGGGAGAGGTAGCGCGCGGTGGTTGCTGTCCGGCGATGGATCTGTTCCGTTCGGAGCCGATGCAACTTGTCCAACTCATCATTCCCGTCGAATCCGCTCACCTCACCGTCTCTTACCTCGGCGAACTTGGCCTTCTTCAATTCAAAGATCTTAATGCAGAGAAGAGCCCTTTCCAACGAACTTATGCTACTCAGATAAAAAGATGTGGTGAGATGGCTCGTACATTGCATTTTTTCAAGGAGCAAATGTTGAAGGATGGTGTTTCACCAACAGGGTCCACAGCACAGCCAGATGTAAACATAGATGACCTTGAGGTAAAACTTACAGAACTTGAGTCAGAGTTAACTGAGATCAATGCAAACAGTGAAAAGTTGCGACGCTCTTACAATGAACTAGTGGAGTATAAGCTTGTTCTGCAGAAGGCTGGTGAATTTTTCCACTTGGCTCAGAGTCGTGCCATAGAGCATCAGAGAGAATATGAATCACAGCATCAAAGTGGTGAATCTATTGAAACGCCTTTATTACAGGATCAAGAATTGTCCACTGATTCATCGAAGCAAGTCAGATTGGGGTTTTTAGCAGGTCTTGTCCCCAGGGAAAAGTCCATGGCATTTGAGAGAATTTTATTCCGTGCTACCAGAGGCAATGTGTTTTTGAGGCAGGTCATTGTTGAGGATCCTGTCACAGACCCTGTGTCTGGAGAACAGgttgagaaaaatgtgtttgTGGTCTTCCATGCTGGTGAGAAAGCAAAAGCCAAGATTCTGAAAATATGTGAGGCATTTGGTGCTAATCGTTACCCTTTTGCTGAGGAACTAGGAAAACAAGCTCAAATGATTTCAGAGGTTTCAGGAAGACTTCTAGAATTGAAGACCACAATAGATGCTGGACTGCAGCATCGAAGCAACTTGCTGCAGACTATTGGAGTTCAATTTGAGCAATGGAATCTTTTGGTGAGGAAGGAGAAAAGCCATATACCATACCTAAACATGCTTAGCCTTGATGTGACCAAAAAATGTCTTGTGGCTGAGGGTTGGAGTCCTATTTTTGCGACAAAGatgATCCAGGATGCACTGCAGCGGGCAGCATTTGACTCTAACTCTCAAGTCAGTGCCATTTTCCAAGTCTTGCAAACTAGGGAGATGCCACCTACCTATTTCCGTACAAATAAATTTACTTCTCCATTTCAAGAAATTATTGATTCATATGGGGTTGCTAAGTATCAGGAGGCAAATCCTACTGTATATACCATAATTacctttccatttctttttgctGTCATGTTTGGTGATTGGGGACATGGCATATGTTTACTACTGGGAGCTCTTTTTTTCATAATCAGGGAGAAGAAACTTTCTGGCCAGAAACTTGGAGACATCACAGAGATGACTTTTGGTGGTCGTTATGTTATTCTGTTGATGGCAATCTTCTCAATATATACTGGTTTGATCTATAATGAGTTCTTTTCTGTTCCATTTGAACTCTTTGGTCCTTCAGCATACGCATGCCATGACCTTTCTTGCAGGGATGCTACTACAGTTGGCCTGGTAAAAGTGCGTCGCACTTACCCATTTGGAGTGGACCCTGTATGGCATGGCACCCGAAGTGAATTGCCATTTCTAAActcattgaaaatgaaaatgtctATTCTTCTTGGAGTTGCCCAAATGAACCTTGGAATTATCATGAGTTATTGCAATGCCAAATTCTTTGGAAGCGGCGTGAATATATGGTTCCAATTTATTCCCCAGATTATATTTCTCAACAGTCTATTTGGTTACCTATCTGCTCTCATTATTGTGAAGTGGTGCACCGGTTCGCAAGCTGATTTGTACCATATAATGATCTACATGTTCCTGAGTCCTACAGATGATTTGGGTGAAAATCAACTCTTTGTTGGTCAGAAAATTCTGCAGCAAGTGTTTTTACTTCTGGCTGTTGTGTCTGTACCCTGGATGCTGATCCCAAAACCTTTTATTCTGAAGAAGCAACATGAAGATAGGCACCAGGGCGAATCCTATTTGCCACTTCAAAGCACAGAAGAGAGCTTGCAAGTGGAGTCAAATCATGATTCGCATGGTCACGAGGAATTTGAATTCAGTGAAGTCTTTGTGCATCAACTCATACACACCATAGAATTTGTACTTGGAGCAGTCTCTAATACAGCTTCTTACCTTCGTCTATGGGCTCTTAGTCTTGCTCATTCAGAGTTATCAAGTGTGTTCTACGAGAAGGTTCTCATAATGGCATGGGGGTACAACAATGTGATCATCCTGATAGTGGGTTTCATTGTCTTCGCTTTTGCTACCGTTGGGGTGTTGCTTGTCATGGAAACTTTGAGTGCCTTCTTGCATGCTTTACGACTTCACTGGGTGGAGTACCAAAACAAGTTCTATGAGGGTGATGGTTACAAGTTCTATCCTTTCTCCTTCTCATTGCTAGATGGTGAGGATGAGTGA 2460 0.4175 MGEVARGGCCPAMDLFRSEPMQLVQLIIPVESAHLTVSYLGELGLLQFKDLNAEKSPFQRTYATQIKRCGEMARTLHFFKEQMLKDGVSPTGSTAQPDVNIDDLEVKLTELESELTEINANSEKLRRSYNELVEYKLVLQKAGEFFHLAQSRAIEHQREYESQHQSGESIETPLLQDQELSTDSSKQVRLGFLAGLVPREKSMAFERILFRATRGNVFLRQVIVEDPVTDPVSGEQVEKNVFVVFHAGEKAKAKILKICEAFGANRYPFAEELGKQAQMISEVSGRLLELKTTIDAGLQHRSNLLQTIGVQFEQWNLLVRKEKSHIPYLNMLSLDVTKKCLVAEGWSPIFATKMIQDALQRAAFDSNSQVSAIFQVLQTREMPPTYFRTNKFTSPFQEIIDSYGVAKYQEANPTVYTIITFPFLFAVMFGDWGHGICLLLGALFFIIREKKLSGQKLGDITEMTFGGRYVILLMAIFSIYTGLIYNEFFSVPFELFGPSAYACHDLSCRDATTVGLVKVRRTYPFGVDPVWHGTRSELPFLNSLKMKMSILLGVAQMNLGIIMSYCNAKFFGSGVNIWFQFIPQIIFLNSLFGYLSALIIVKWCTGSQADLYHIMIYMFLSPTDDLGENQLFVGQKILQQVFLLLAVVSVPWMLIPKPFILKKQHEDRHQGESYLPLQSTEESLQVESNHDSHGHEEFEFSEVFVHQLIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFYEKVLIMAWGYNNVIILIVGFIVFAFATVGVLLVMETLSAFLHALRLHWVEYQNKFYEGDGYKFYPFSFSLLDGEDE 819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g4156 819 Coils Coil 101 128 - -
Ssu1g4156 819 Pfam V-type ATPase 116kDa subunit family 39 811 IPR002490 GO:0033179|GO:0046961|GO:1902600
Ssu1g4156 819 PANTHER V-TYPE PROTON ATPASE SUBUNIT A 5 819 - -
Ssu1g4156 819 PIRSF ATP6V0A1 11 819 IPR026028 GO:0000220|GO:0046961
Ssu1g4156 819 PANTHER VACUOLAR PROTON ATPASES 5 819 IPR002490 GO:0033179|GO:0046961|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g4156 Ssu-Chr1 101134732 101144057 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g4156 13 819 Primary Pumps ATPases(2) AT2G21410 76.609 0.0 1287
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g4156 K02154 - gmx:100810062 1420.22