Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g4154 ATGGCTAAACCGAAGGCTCCAAGGCGAACCCTAGAGTCATACTCAGTCAAGCACATAAGCAAAACCGTTAGAGCTGGCGATTGCGTGCTCATGCGGCCCTCCGATCCGGCGAAACCGTCGTACGTGGCGAGGATCGAGCGGATCGAAGCCGACGCGCGCGGCGCGAACGTGAAGATTCACGTGCGGTGGTACTACCGGCCGGAGGAGTCAATCGGCGGCCGCCGCCAGTTTCACGGCTCGAAGGAGGTTTTCCTCTCCGATCACTTCGATGTTCAGAGCGCCGACACCATCGAAGGCAAGTGTACGGTCCACAGCTTCAAGAGTTACACGAAGCTCGATGCTGTCGGAAACGACGATTTCTTCTGTCGTTTCGAGTACAATTCCTCCACCGGCGCCTTCAATCCTGATAGAGTTGCCGTGTATTGTAAATGTGAGATGCCTTACAACCCTGATGACCTAATGGTCCAATGCGAGGGCTGCAGTGACTGgTTCCACCCTGCTTGTATAGACATGACTGTTGAGGAAGCCAAAAGACTTGACCACTTCTTTTGTGAAAGTTGTTCCGCCGAAGGTCAAAAAAAGTTGCAAAACTCTCATTCTGCTTCTAGACACTCAGATACAAAGGTGGATACTAAACGCCGTCGTAGGTAA 651 0.5253 MAKPKAPRRTLESYSVKHISKTVRAGDCVLMRPSDPAKPSYVARIERIEADARGANVKIHVRWYYRPEESIGGRRQFHGSKEVFLSDHFDVQSADTIEGKCTVHSFKSYTKLDAVGNDDFFCRFEYNSSTGAFNPDRVAVYCKCEMPYNPDDLMVQCEGCSDWFHPACIDMTVEEAKRLDHFFCESCSAEGQKKLQNSHSASRHSDTKVDTKRRRR 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g4154 216 SUPERFAMILY FYVE/PHD zinc finger 130 193 IPR011011 -
Ssu1g4154 216 PANTHER OS08G0421900 PROTEIN 1 216 - -
Ssu1g4154 216 Pfam BAH domain 22 136 IPR001025 GO:0003682
Ssu1g4154 216 ProSitePatterns Zinc finger PHD-type signature. 142 187 IPR019786 -
Ssu1g4154 216 ProSiteProfiles Zinc finger PHD-type profile. 139 190 IPR019787 -
Ssu1g4154 216 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 136 203 IPR013083 -
Ssu1g4154 216 SMART PHD_3 141 188 IPR001965 -
Ssu1g4154 216 SMART BAH_4 21 137 IPR001025 GO:0003682
Ssu1g4154 216 Gene3D - 2 135 IPR043151 -
Ssu1g4154 216 Pfam PHD-finger 141 189 IPR019787 -
Ssu1g4154 216 ProSiteProfiles BAH domain profile. 21 137 IPR001025 GO:0003682
Ssu1g4154 216 PANTHER CHROMATIN REMODELING PROTEIN SHL 1 216 IPR045205 GO:0006325|GO:0035064
Ssu1g4154 216 MobiDBLite consensus disorder prediction 194 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g4154 Ssu-Chr1 101103658 101109572 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g4154 41 139 Core DNA Replication Machinery Family AT4G14700 31.313 1.19e-10 58.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Ssu1g4154 BAH 2.1e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g4154 - - gmx:100787968 451.44