Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g4153 ATGGCAACTTATTACGCAAGTTCAAGTAATCAAAGGGATGCAGTGCCTATGCTGTGTCTTAGGGAGCCTTTGCCTAATTCGTATCCCGAGACACCAATTTTGCCGAGCAACATGACATTGTATATGAACTCTGGTTCATATTCAGAAGCGTTGTCTGGCAATTCTCAGCAGCAAAACAATTGCTTTGTGGTTCCATCACCATCAGTAGGTGCTTCACATTCCACTCCTGAGCAGCAAGAAATCTTAGTTAATATTGGTGGGTTCCAAACTGGGGTTCATGATTTCAGTGCATGGAGGGAGGGTAGAAGTGAGATGTTAGTCAGACAACCTATGGATAGACGGAACTTGCAAGGTCAGGGATTATCTCTCAGCCTTGGAACCCACATATCCTCAGGAATTCAAATGTCTTCTATCCGTGATAGGAATCATAGTTCAAGTTTTGAATGGTTTTGGGGTACTAACCCATCAATGTCAGGCAATGAGGCCTACCAAAATGGCTCATCTAGGGATGAGGGTATGAGGCATTCTGAAAATTTTCCACCTGGGTTACCTGAAGCTAGTCAAGATTTGAACAGAGCGGATTCGTTTCATGGAATGTCTAGTGTTGGAAGAACGGTTCCTATCTCCAAATATATCAAGGCAGTGCAACAACTGCTTGATGAAGTTGTTGACATCCGAAAAGCTATTAAAAAACCTGATATGAGAAGTCATAGCACACATGCGAACTCTAAGAAGAATTCTAAGGAGGAAGATGAGCAGCTAGAAAATGAAAGGCCTTCTGCAAATGGAGTGCCTAATTCTCAAGCTTCAGATAGTAACTCCTCTGGTGAGCTTTCACATGCTGAAAAACAAGATCTGCACAACAAGTTAACGAAGCTTTTGTCCATGTTGGACGAGGTTGACAATAGGTACAAACAATATTATAATCAGATGCAGATTGTGGTGTCATCATTTGATGTGATAGCAGGATGTGGAGCAGCTAAACCATACACAGCCCTTGCTCTTCAAACCATTTCATGCCATTTTCGGTGTTTGCATGATGCAATCACTGGTCAAATCAGTGCAACACAAAAGAACCTTGGAGAGCATGATGCTTCTGGAAGTAATAAAGGAGTTGGAATGGCAAGACTAAAGTATGTGGACCAACAAATCCGACAACAAAGGGCTCTTCAGCAGCTTGGCATGATGCAACATGCATGGAGACCACAAAGGGGGCTTCCAGAAAGCTCTGTTTCAATTCTTCGTGCTTGGCTTTTTGAGCATTTCCTTCATCCCTATCCAAAGGATTCTGATAAGATCATGCTAGCAAGACAGACAGGCTTGACCAGAAGTCAGGTCTCAAATTGGTTTATAAATGCGCGTGTGCGTCTATGGAAACCTATGATTGAGGAGATGTACAAGCAAGAGATCTGTGATGCTGACATGGACTCAAGTTCGTCATCTGAAAATGTGTCCAAGGTAACAAAAAATGATGTGAAGACCTCCAATGATATGGGTGATGATTCACAGCACCGTCAAAGTCCAATAGTAGCCAACACAAATCACAGTGGTGCACAACCTAAGGACCTCAGATATGATCAGGTTCTTGATACAGAAATTGTGGCATCCACTGGATTAGCTAGTCTCATAAGTGGAGGTCATGAGGCTGAAACTGAACATAGGCCAGTAAAGCAGTCTGAGGAGCAAAGGCCAAATTTGGATGATTGTGGTCTCTTTCCTAATGACACGGTTGTTCAGTCTGATGGAGCTAATGACGGGTTTGTGGCAGTTGGTCCAACATGCCAAATGTCAGAGTCTGGGAGGTTCAAGTCAGCAAGTGGGGTGTCTCTAACATTGGGCTTGCAGCATTGTGAAGGAGGTAATTTTTTACCCGGTGAGACCCATCTTAGTTTGGTTTCCATGAGGGAGGATGACATCTACAGCACGGCTGCAGCTTCTACCGTAGGAGTAGAGACAGCAGAACTTGAGTGCATTGGTAATGGAAACCAGCACCAAAGGTTTAGTTCACCTCATATGTTACATGATTTTGTAGTATGA 2037 0.434 MATYYASSSNQRDAVPMLCLREPLPNSYPETPILPSNMTLYMNSGSYSEALSGNSQQQNNCFVVPSPSVGASHSTPEQQEILVNIGGFQTGVHDFSAWREGRSEMLVRQPMDRRNLQGQGLSLSLGTHISSGIQMSSIRDRNHSSSFEWFWGTNPSMSGNEAYQNGSSRDEGMRHSENFPPGLPEASQDLNRADSFHGMSSVGRTVPISKYIKAVQQLLDEVVDIRKAIKKPDMRSHSTHANSKKNSKEEDEQLENERPSANGVPNSQASDSNSSGELSHAEKQDLHNKLTKLLSMLDEVDNRYKQYYNQMQIVVSSFDVIAGCGAAKPYTALALQTISCHFRCLHDAITGQISATQKNLGEHDASGSNKGVGMARLKYVDQQIRQQRALQQLGMMQHAWRPQRGLPESSVSILRAWLFEHFLHPYPKDSDKIMLARQTGLTRSQVSNWFINARVRLWKPMIEEMYKQEICDADMDSSSSSENVSKVTKNDVKTSNDMGDDSQHRQSPIVANTNHSGAQPKDLRYDQVLDTEIVASTGLASLISGGHEAETEHRPVKQSEEQRPNLDDCGLFPNDTVVQSDGANDGFVAVGPTCQMSESGRFKSASGVSLTLGLQHCEGGNFLPGETHLSLVSMREDDIYSTAAASTVGVETAELECIGNGNQHQRFSSPHMLHDFVV 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g4153 678 ProSiteProfiles 'Homeobox' domain profile. 397 460 IPR001356 GO:0003677
Ssu1g4153 678 SMART prehox3 200 351 IPR006563 -
Ssu1g4153 678 SMART HOX_1 400 464 IPR001356 GO:0003677
Ssu1g4153 678 MobiDBLite consensus disorder prediction 546 567 - -
Ssu1g4153 678 Coils Coil 283 303 - -
Ssu1g4153 678 MobiDBLite consensus disorder prediction 547 564 - -
Ssu1g4153 678 Pfam Associated with HOX 208 350 IPR006563 -
Ssu1g4153 678 SUPERFAMILY Homeodomain-like 401 466 IPR009057 -
Ssu1g4153 678 MobiDBLite consensus disorder prediction 473 492 - -
Ssu1g4153 678 MobiDBLite consensus disorder prediction 501 520 - -
Ssu1g4153 678 Pfam Homeobox KN domain 417 456 IPR008422 GO:0003677|GO:0006355
Ssu1g4153 678 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 10 77 629 - -
Ssu1g4153 678 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 77 629 - -
Ssu1g4153 678 MobiDBLite consensus disorder prediction 259 277 - -
Ssu1g4153 678 MobiDBLite consensus disorder prediction 160 190 - -
Ssu1g4153 678 MobiDBLite consensus disorder prediction 473 522 - -
Ssu1g4153 678 MobiDBLite consensus disorder prediction 230 257 - -
Ssu1g4153 678 MobiDBLite consensus disorder prediction 230 284 - -
Ssu1g4153 678 CDD homeodomain 400 461 IPR001356 GO:0003677
Ssu1g4153 678 Gene3D - 396 473 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g4153 Ssu-Chr1 101088374 101091469 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g4153 27 489 Homeobox Transcription Factor Family AT4G34610 47.423 7.76e-120 366
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Ssu1g4153 POX 7.5e-48 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g4153 - - gmx:100801522 1104.35