Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g4135 ATGGCTCCAAAGAAGGACAAGGCTCCCCCACCTTCGTCAAAGCCCGCCAAGTCTGGCGGTGGCAAGCAGAAGAAGAAGAAGTGGAGCAAGGGAAAGCAAAAGGAGAAGGTGAACAACATGGTGCTGTTCGATCAGGCTACCTATGACAAGCTCCTTTCTGAGGCACCCAAATACAAGCTCATTACTCCTTCTATCCTCTCTGATCGTTTGAGGATTAATGGATCACTTGCAAGGAAGGCTATAAGGGAATTGATGGCTAGAGGTTCAATCAGGATGGTGTCTGCCCATGCAAGTCAGCAGATTTACACTAGAGCTACAAACACCTAG 327 0.4832 MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQATYDKLLSEAPKYKLITPSILSDRLRINGSLARKAIRELMARGSIRMVSAHASQQIYTRATNT 108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g4135 108 Pfam S25 ribosomal protein 7 105 IPR004977 -
Ssu1g4135 108 PANTHER 40S RIBOSOMAL PROTEIN S25 2 108 IPR004977 -
Ssu1g4135 108 MobiDBLite consensus disorder prediction 1 36 - -
Ssu1g4135 108 PANTHER BNAA04G12260D PROTEIN 2 108 - -
Ssu1g4135 108 Gene3D - 21 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g4135 Ssu-Chr1 100822739 100824315 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g4135 1 107 Cytoplasmic Ribosomal Protein Gene Family AT4G34555 93.458 4.37e-56 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g4135 K02975 - gmx:100499810 159.844