Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g4125 ATGTTGCACTGTGTGAACACGTCGGGGAACCTAGCTGCTGGGGACATGACAGTGTTGGAAAGGCAGAGGGAGAAGATGAAGTTGCAAGAAGAGCAAGGGTTCAACGgtgttttctcttcttctctgcTTGTTCAGGAGTCCATGATGGTGGCTGCTGATTCCGGTTTTTCACTTGCTGAGGTGGTGGCTCAGGCCCGCTCAATCAACATGCCAACTGCTCCTGGGTTTGATGTGAATTCTTCAATTTCAAGCACTTTTAGTTGTCCACCTGCTCTGGTGGAGCCCAAGCCCACTGACTCCTCAATTAGGAGAGAGAGTTTCAAGAAGAGGAAACCTGACAAGCCTCACTATCCCAAGtttgttACAGAAAATGATAACAAAGACAAGAGGATCAAAGTCGGCGCGGACGATGGAGAATCCAAAATCACAGGGCTCACAACAAACACAAGTAGCAACAACACCGAAACCTGTGCAGATACTTCAAATTCCAAGCAAAATTCAAAAGCCTCTGAGGTTCAAAAGCCTGATTACATTCATGTCCGAGCACGTCGTGGCCAAGCCACTGATAGCCATAGCTTAGCGAAAGAAAGGGAAAAAATTAGTGAGAGAATGAAGTATTTGCAAGATTTAGTACCCGGATGCAACAAAATCACGGGAAAAGCTGGAATGTTGGATGAAATCATCAACTATGTTCAATCTCTTCAGCGACAAGTTGAGTTTCTGTCAATGAAATTAGCTGCTGTGAACCCAAGGCTTGACTTCGGTATTGATGATCTATTTGACAAAGAGGTGTTTCCCGCTTGTGCTGCAAATTTTCCAAACATAGGAATGCCATCAGACATGTCTAACCCTGCCTATCTTCAGTTTAATTCGCCACAGCAAATTGCTTCGTATGGAGGATTAGCAGGGATTAACCCTTCCGATATGGGGCTTAGAAGGACCACAAGTGCCCCTGTATCATTGCCTGAAACATATCTTTACTCGTCCTGTTTCACGCAAATGCTACCCTCCTCAACATGGGAAGGTGATTTCCAAAACCTTagcaattttgattttgatcaagCACGAGCGACATCTTTCCCTTCTCAGCTGTTCTCAGGTCTGGTTGAAGCTGGCAATCTAATGATGGAGATGTAG 1137 0.4362 MLHCVNTSGNLAAGDMTVLERQREKMKLQEEQGFNGVFSSSLLVQESMMVAADSGFSLAEVVAQARSINMPTAPGFDVNSSISSTFSCPPALVEPKPTDSSIRRESFKKRKPDKPHYPKFVTENDNKDKRIKVGADDGESKITGLTTNTSSNNTETCADTSNSKQNSKASEVQKPDYIHVRARRGQATDSHSLAKEREKISERMKYLQDLVPGCNKITGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNPRLDFGIDDLFDKEVFPACAANFPNIGMPSDMSNPAYLQFNSPQQIASYGGLAGINPSDMGLRRTTSAPVSLPETYLYSSCFTQMLPSSTWEGDFQNLSNFDFDQARATSFPSQLFSGLVEAGNLMMEM 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g4125 378 MobiDBLite consensus disorder prediction 87 175 - -
Ssu1g4125 378 Gene3D - 184 253 IPR036638 GO:0046983
Ssu1g4125 378 PANTHER TRANSCRIPTION FACTOR BHLH63-LIKE 57 357 - -
Ssu1g4125 378 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 197 252 IPR036638 GO:0046983
Ssu1g4125 378 MobiDBLite consensus disorder prediction 98 137 - -
Ssu1g4125 378 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 184 234 IPR011598 GO:0046983
Ssu1g4125 378 CDD bHLH_AtBPE_like 176 259 - -
Ssu1g4125 378 MobiDBLite consensus disorder prediction 141 172 - -
Ssu1g4125 378 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 57 357 IPR024097 GO:0006355
Ssu1g4125 378 SMART finulus 193 240 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g4125 Ssu-Chr1 100666493 100668704 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g4125 15 347 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G34530 40.327 6.72e-58 190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g4125 - - gmx:100798855 565.074