Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g4124 ATGGCCTCAAGCACTTTCAGCAAACAAAAGCCTTGTGATTCGTGTTGGACCCCAAAACAGAACAAGGTGTTTGAAAAGGCACTTGCAAAGTATGACAAGGATACCCCTGACCGCTGGCACAATGTAGCCAAAGCAGTTGGTGGTAAATCAGCAGAGGAAGTTAAGAGACACTATGAGATACTCTTGGAGGATCTCAGGCACATAGAGTCCGGTCATGTTCCCATTCCCAATTACAGATCCACACCAAGTACCTTTCCTCTTTGA 264 0.4583 MASSTFSKQKPCDSCWTPKQNKVFEKALAKYDKDTPDRWHNVAKAVGGKSAEEVKRHYEILLEDLRHIESGHVPIPNYRSTPSTFPL 87
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g4124 87 ProSiteProfiles SANT domain profile. 16 66 IPR017884 -
Ssu1g4124 87 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 1 81 IPR044636 GO:0003700
Ssu1g4124 87 PANTHER PROTEIN RADIALIS-LIKE 3 1 81 - -
Ssu1g4124 87 CDD SANT 16 62 IPR001005 -
Ssu1g4124 87 Pfam Myb-like DNA-binding domain 15 58 IPR001005 -
Ssu1g4124 87 ProSiteProfiles Myb-like domain profile. 16 62 IPR001005 -
Ssu1g4124 87 SUPERFAMILY Homeodomain-like 14 70 IPR009057 -
Ssu1g4124 87 SMART sant 12 64 IPR001005 -
Ssu1g4124 87 Gene3D - 9 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g4124 Ssu-Chr1 100647522 100647785 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Ssu1g4124 Myb_DNA-binding 1.2e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g4124 - - gmx:100805232 172.555