Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g4122 ATGGCGGGAGTGAGGGAACAGGACCAGTACATGCCAATAGCGAACGTGATAAGGATCATGCGAAGGATTCTGCCGGGGCACGCGAAGATCTCAGACGGCGCGAAGGAGACGATCCAAGAGTGCGTGTCTGAGTACATCAGCTTCATCACCGCGGAAGCGAACGAGCGGTGCCAGCGCGAGCAACGGAAGACGGTAACCGCAGAGGACGTGCTGTGGGCAATGGGGAAGCTTGGCTTCGACGACTACGTTCACCCTCTCACACTTTACCTTCACCGCTACCGCCAATGTGAAGGAGAACCTGCTTCTGTGAGACGCGCTTCTGCCTCTGCTCTGGGGATGCGCCCGCACCCGCACCCACCTTATTCTCATGAATTTGGAATGTTTGAGTTTGACCCATCGCAAGGGTTCTACAGAGATGATGCCTCTGGCTCAGCCTCTGGTTCTAGCACTTTTATTGCCACCTTTGATCCTTATACTAACATCAAACGTGATGCCCGGTGA 501 0.5489 MAGVREQDQYMPIANVIRIMRRILPGHAKISDGAKETIQECVSEYISFITAEANERCQREQRKTVTAEDVLWAMGKLGFDDYVHPLTLYLHRYRQCEGEPASVRRASASALGMRPHPHPPYSHEFGMFEFDPSQGFYRDDASGSASGSSTFIATFDPYTNIKRDAR 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g4122 166 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 11 74 IPR003958 -
Ssu1g4122 166 Gene3D Histone, subunit A 2 114 IPR009072 GO:0046982
Ssu1g4122 166 PRINTS CCAAT-binding transcription factor subunit A signature 76 94 - -
Ssu1g4122 166 PRINTS CCAAT-binding transcription factor subunit A signature 57 75 - -
Ssu1g4122 166 PRINTS CCAAT-binding transcription factor subunit A signature 38 56 - -
Ssu1g4122 166 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 4 113 IPR027113 GO:0001228|GO:0006355|GO:0016602
Ssu1g4122 166 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 4 113 - -
Ssu1g4122 166 SUPERFAMILY Histone-fold 7 105 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g4122 Ssu-Chr1 100616417 100616917 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g4122 4 99 CCAAT-HAP3 Transcription Factor Family AT5G47670 87.500 1.28e-59 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Ssu1g4122 CBFD_NFYB_HMF 3e-24 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g4122 K08065 - gmx:100811633 260.766