Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g4121 ATGTCTTCTGCAGAAATTGAGTACCGGTGCTTTGTTGGTGGGCTAGCCTGGGCCACCGACAACGACGCTCTCGAGAAAGCCTTCTCTCCGTATGGCGAGATCGTCGAATCGAAGGTTATTAACGATCGTGAAACTGGAAGATCGAGAGGGTTTGGATTTGTGACCTTCGCCACGGAGCAGGCGATGAGGGACGCCATTGAAGGAATGAACGGTCAGAACCTCGACGGTCGTAACATCACCGTGAACGAGGCTCAGTCCCGTGGAAGAGGTGGaggtggcggtggcggtggtTACGGAGGaggtagtggtggcggtggttaCGGTGGCGGAGGGTATAGCCGCGGTGGAGGTGGATATGGAGGAGGTGGCCGCCGTGAAGGTGGTGGTGGCTATAACCGCAACGGTGGTGGTGGTTATGGTGGCGGTAGTGGATAtggaggtggtggtggcggtTATGGCGGTGGCCGAGACCGTGGATATGGTGACGGTGGATCTCGCTACTCAAGGGGAGGTGGTGCTTCGGACGGTGGAAGCTGGAGGAATTAA 546 0.5073 MSSAEIEYRCFVGGLAWATDNDALEKAFSPYGEIVESKVINDRETGRSRGFGFVTFATEQAMRDAIEGMNGQNLDGRNITVNEAQSRGRGGGGGGGGYGGGSGGGGYGGGGYSRGGGGYGGGGRREGGGGYNRNGGGGYGGGSGYGGGGGGYGGGRDRGYGDGGSRYSRGGGASDGGSWRN 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g4121 181 PANTHER GEO13361P1-RELATED 1 123 - -
Ssu1g4121 181 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 79 IPR000504 GO:0003723
Ssu1g4121 181 SMART rrm1_1 9 82 IPR000504 GO:0003723
Ssu1g4121 181 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 8 86 IPR000504 GO:0003723
Ssu1g4121 181 SUPERFAMILY RNA-binding domain, RBD 8 140 IPR035979 GO:0003676
Ssu1g4121 181 PANTHER RNA-BINDING PROTEIN GRP1A, PUTATIVE, EXPRESSED-RELATED 1 123 - -
Ssu1g4121 181 Gene3D - 2 121 IPR012677 -
Ssu1g4121 181 MobiDBLite consensus disorder prediction 120 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g4121 Ssu-Chr1 100591621 100592472 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g4121 10 81 Eukaryotic Initiation Factors Gene Family AT2G23350 45.833 5.10e-12 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g4121 - K13195 lja:Lj1g3v2296520.2 164.466