Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g4119 ATGATACTCACGAACAGCATGCTTACTGGAGTTCTGCCAGGGAGATTGTTTACTGGTTCCTTGCAGTTGCGGTTACTAGTGCTGAGGCAAAACAATTTTAGTGGTTCTCTGCCTGTTGAGCTGTGGTCTCTGCCAAGATTGAGCTTCCTTGATGTGTCTGCCAATAACTTCAGTGGTCTGCTTCCTAATAATTCTAGTTCTGCTGCTAATAATGCTACTGTTGCTGTGCTCaatatttctcataataagTTTTATGGAGGACTCACTCCTGTGCTCAGAAGGTTTGGTTTTGTTgatatttcaaacaattattttgagGGCAAGGTTCTTGATTTCATGCATAATGTATCTCTAGATAGCAACTGCCTCCAAAATGCGACAAATCAGAGGTCAACAGTGGAATGTGCATCATTTTATGCAGAGAGGGGGCTCAGTTTTGATAATTTTGGACACCCAAATACGACAAAACCTCCCGCATCGGAAAGCTCTGGGAAGAGCAATAAAACTAAGATTATATTGGCTGCAGTCTTGGGTGGAGtgggtttaattgcacttttggtgtTGCTACTGGTACTGCTGCTTCTGTGCGCTCGTAAGAGGGGTAATTCAAGTCAAAGAGGAAATGGTGTGGGTCCTGCTCCTGCTGGCAGCAGTTCTCCAAATCCTGGTGTATCAGTTGACTTTCCAAATGTTGGAGACTCATTTGCATATCATCAGTTGCTCCAGGCAACAGGAGATTTCAATGAGGCAAATCTTATCAAACAAGGCCACACTGGGGATTTCTTCAATGGTGTTTTGGAAGGTGGGATTCCTGTCGTCATCAAAAGGATCGATATGCGTTCAACTAAAAAGGCGGCTTACCTGTCAGAATTGGACTTTTACAATAAGGTTTCTCATCAAAGATTTGTTCCCTTGTTAGGTCATTGCTTAGAAAATGAGAATGAGAAGTTCCTGGTTTATAGACACATGCCAAATGGGGACTTGTCTAATAGCTTGTACTACAAAAACACTACATCTGAAGATGGTACTTTGCAATCATTGGACTGGATAACTAGGTTAAAAATTGCTACTGGAGCAGCAGAGGCCCTATCGTATCTACATCATGAATGTATTCCACCCATTGTTCACAGAGACATTCAAGCAAGCAGTATACTTCTAGATGACAAATACGAAGTTCGGTTAGGGAGTCTAAGTGAAGCCTGTGCTCAAGAAGGTGATATTCATCAAAGTAAAATCACCCGGTTTTTGCGACTGCCTCAGTCCTCTGAACAAGGCACATCTGGTTCATCAACATCAATTTGTGCCTATGACGTTTATTGCTTTGGGAAAGTTTTACTTGAACTGGTGACCGGTAAGCTGGGAATGAGTGCATGCAGTGACGCCGAAGTAAAGGAATGGTTCGATCAGGTTCTACCTTGCATTAATATGTATGACAAGGAGCTTGTGACGAAAATTGTTGATCCATCGATGGTTGTTGATGAGGATTTCTTAGAGGAAGTATGGGCTATAGCCATTGTTGCCAGGTCTTGCCTAAATCCCAAACCTTCAAGAAGACCCCCAATGAGGTATGTTCTCAAGGCTTTGGAAAACCCTTTGAAAGTTGTGAGGGAAGAAAATTCCAGTTCTGCACGGCTCAGAGCAACCTCTTCTAGAGGCTCTTGGAATGCTGCTACTTTCTTTGGTAGTTGGCGTCAGAGTTCATCTGATGTAACAGTAACTCCAGCAGCCTCAGGCACAAAACTGGAAAGAACTAGTAGTTTAAAGCTGTCAGGAACTACCGGCTCGCAGTCACAGGGTAGCCTCCACAATGGTGGAGGTGATGTTTCATCATCACGGAGACGACATTCAAATGAGATATTCCCAGAGCCATCTGGCGCACGTGATGTAGAGGTTGGAGCTGGCATAGAGACTTGa 1914 0.4248 MILTNSMLTGVLPGRLFTGSLQLRLLVLRQNNFSGSLPVELWSLPRLSFLDVSANNFSGLLPNNSSSAANNATVAVLNISHNKFYGGLTPVLRRFGFVDISNNYFEGKVLDFMHNVSLDSNCLQNATNQRSTVECASFYAERGLSFDNFGHPNTTKPPASESSGKSNKTKIILAAVLGGVGLIALLVLLLVLLLLCARKRGNSSQRGNGVGPAPAGSSSPNPGVSVDFPNVGDSFAYHQLLQATGDFNEANLIKQGHTGDFFNGVLEGGIPVVIKRIDMRSTKKAAYLSELDFYNKVSHQRFVPLLGHCLENENEKFLVYRHMPNGDLSNSLYYKNTTSEDGTLQSLDWITRLKIATGAAEALSYLHHECIPPIVHRDIQASSILLDDKYEVRLGSLSEACAQEGDIHQSKITRFLRLPQSSEQGTSGSSTSICAYDVYCFGKVLLELVTGKLGMSACSDAEVKEWFDQVLPCINMYDKELVTKIVDPSMVVDEDFLEEVWAIAIVARSCLNPKPSRRPPMRYVLKALENPLKVVREENSSSARLRATSSRGSWNAATFFGSWRQSSSDVTVTPAASGTKLERTSSLKLSGTTGSQSQGSLHNGGGDVSSSRRRHSNEIFPEPSGARDVEVGAGIET 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g4119 637 SUPERFAMILY Protein kinase-like (PK-like) 221 528 IPR011009 -
Ssu1g4119 637 Gene3D Phosphorylase Kinase; domain 1 224 322 - -
Ssu1g4119 637 MobiDBLite consensus disorder prediction 574 637 - -
Ssu1g4119 637 Gene3D Transferase(Phosphotransferase) domain 1 323 550 - -
Ssu1g4119 637 Gene3D Ribonuclease Inhibitor 1 139 IPR032675 -
Ssu1g4119 637 ProSiteProfiles Protein kinase domain profile. 247 533 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g4119 637 MobiDBLite consensus disorder prediction 574 607 - -
Ssu1g4119 637 Pfam Protein tyrosine and serine/threonine kinase 252 525 IPR001245 GO:0004672|GO:0006468
Ssu1g4119 637 MobiDBLite consensus disorder prediction 202 223 - -
Ssu1g4119 637 PANTHER RECEPTOR-LIKE PROTEIN 55 3 579 - -
Ssu1g4119 637 PANTHER BNAA07G03560D PROTEIN 3 579 - -
Ssu1g4119 637 SUPERFAMILY L domain-like 3 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g4119 Ssu-Chr1 100554269 100558048 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g4119 1 420 Miscellaneous Gene Families AT2G16250 57.512 1.38e-165 488
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIV Ssu1g4119 PK_Tyr_Ser-Thr 7.1e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g4119 - - gmx:100805769 1048.5