Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g4118 ATGCTCGCTTTCGCTTTTGTATCCGTTGATGAAGTAGAAACCTCACTTTTCCCAATATTCTcgcttcttttcttctttatttctttcattcttttcattttccaatGCTCAAGCAACAACTACTTCACTCGATCACAATTTCCTCAGCAACCAAACGCCATTAACAGCACATTCTCACATCTTCACTCCATTCCCATATCTCGCCGGCAACAAAAAAACTCTGCAATGGCAGCATCCGCCACCTCCTCCGGCGGCGCGCTGCCGGAGCTAACTAACCGAACCCCCTTTCTCGGCCTCAAACTCTACGTCTTAGTCCTCGTTTTGGTTCTAATCGTGGTCGCAACGGTGATCCTGATCCTCCTCTGCGTTCGCCGGAGCCGGAGCTCGAAGAGGCGGAAAATGAGAGTGAAGCACAGCTCCGGCGCGATCCCGCTGGTCTCGAAGGAGATCGTGGAGGTGAATGCGTTGGAGCTGAAAATCGAAGATGTCGATGACGAGGATCCGAAGAAGAATAAGCATGTGGAGGTGGAAGAGAGTGTGTCGGTGGAGTCGCCGAACATAGGGTGGGGACGCTGGTATAGCCTCAAGGAGCTTGAGGCTGCGACTGAAGGGTTTGCGGAAGTGAATGTGATCGGAGAAGGAGGGTATGGGATTGTGTACAAAGGAGTTCTGCTCGACGGTTCCGTCGTCGCTGTCAAAAATCTTCTCAACAACAAGGGTCAGGCGGAGAAAGAGTTTAAGGTGGAGGTTGAAGCCATCGGAAAAGTGAGGCATAAGAATTTGGTGGGGTTAGTTGGATATTGTGCAGAAGGTGCTCAAAGGATGCTTGTTTATGAATATATTGACAATGGAACATTGGAGCAGTGGCTGCATGGTGATGTGGGACCAGTTAGCCCCTTGACATGGGATATACGAATGAAGATTGCTGTTGGGACTGCAAAAGGGCTAGCCTACTTGCACGAAGGATTAGAACCCAAAGTTGTCCACCGAGATGTAAAATCCAGTAACATTCTTTTGGACAAAAAGTGGAATGCTAAAGTATCAGACTTTGGACTGGCCAAGCTCTTAGGGTCTGAGAAAAGCTACGTGACAACGCGTGTAATGGGGACATTTGGATATGTTTCACCTGAGTATGCAAGCACGGGTATGCTTAACGAAGGCAGCGATGTGTATAGTTTCGGGATTCTACTTATGGAGCTAATTACAGGAAGAAGTCCCATTGATTATTCTAGACCACCTGGAGAGATGAACTTGGTTGATTGGTTTAAGGGAATGGTTGCAAGTCGTCGTGGTGATGAGCTAGTTGATCCTTTAATAGAGATTCAGCCCTCTCCAAGATCTATGAAGCGAGCTTTACTGGTTTGTCTGCGCTGTATAGACTTGGATGTCAGTAAGCGACCAAAGATGGGCCAAATTGTTCATATGCTTGAGGCTGATGATTTTCCCTTTCGTTCTGAACTTCGAACTAATCGAGAGAAAGATCCTGTTCATTCTAAAGCAGCTGCTTCCAGTAAGATTCCATATCCAACAAGGCATGTCGAGCCCGTAGATAAATCAAGCTGGAGATGA 1569 0.4634 MLAFAFVSVDEVETSLFPIFSLLFFFISFILFIFQCSSNNYFTRSQFPQQPNAINSTFSHLHSIPISRRQQKNSAMAASATSSGGALPELTNRTPFLGLKLYVLVLVLVLIVVATVILILLCVRRSRSSKRRKMRVKHSSGAIPLVSKEIVEVNALELKIEDVDDEDPKKNKHVEVEESVSVESPNIGWGRWYSLKELEAATEGFAEVNVIGEGGYGIVYKGVLLDGSVVAVKNLLNNKGQAEKEFKVEVEAIGKVRHKNLVGLVGYCAEGAQRMLVYEYIDNGTLEQWLHGDVGPVSPLTWDIRMKIAVGTAKGLAYLHEGLEPKVVHRDVKSSNILLDKKWNAKVSDFGLAKLLGSEKSYVTTRVMGTFGYVSPEYASTGMLNEGSDVYSFGILLMELITGRSPIDYSRPPGEMNLVDWFKGMVASRRGDELVDPLIEIQPSPRSMKRALLVCLRCIDLDVSKRPKMGQIVHMLEADDFPFRSELRTNREKDPVHSKAAASSKIPYPTRHVEPVDKSSWR 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g4118 522 SUPERFAMILY Protein kinase-like (PK-like) 184 477 IPR011009 -
Ssu1g4118 522 SMART serkin_6 205 483 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g4118 522 Pfam Protein kinase domain 206 474 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g4118 522 PANTHER OS03G0227900 PROTEIN 88 173 - -
Ssu1g4118 522 CDD STKc_IRAK 211 477 - -
Ssu1g4118 522 PANTHER OS03G0227900 PROTEIN 177 493 - -
Ssu1g4118 522 ProSitePatterns Protein kinases ATP-binding region signature. 211 233 IPR017441 GO:0005524
Ssu1g4118 522 ProSitePatterns Serine/Threonine protein kinases active-site signature. 327 339 IPR008271 GO:0004672|GO:0006468
Ssu1g4118 522 ProSiteProfiles Protein kinase domain profile. 205 469 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g4118 522 MobiDBLite consensus disorder prediction 487 522 - -
Ssu1g4118 522 PANTHER OS01G0323000 PROTEIN 88 173 - -
Ssu1g4118 522 Gene3D Phosphorylase Kinase; domain 1 164 280 - -
Ssu1g4118 522 Gene3D Transferase(Phosphotransferase) domain 1 281 490 - -
Ssu1g4118 522 PANTHER OS01G0323000 PROTEIN 177 493 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g4118 Ssu-Chr1 100529489 100533327 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g4118 192 477 Trihelix Transcription Factor Family AT5G38560 49.315 1.79e-92 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Ssu1g4118 Pkinase 5.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g4118 - - gmx:100779420 758.829