Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g4114 ATGTCTTCAAATTCCGATACGAATTCCCCAACACCACCTCCACCCGATTCATCTTCATCCCAATCCCCGCCTCCACCATCCCAGGGTAATTCgtcgtcaccgccaccaccatcccAAGATAACTCATCGCCGCCACCGTCGTCTCCGCCACCATCATCTCCGCCTCCTCAGTCGTCGTcgtcgccgccaccaccatcaccaccaccgccaGAAAATGATAAGAATTCTCCGCCCCCGCCATCTGACTCCTCCCcatctccaccaccaccacctcctgaTAAGGAATCAGGAAGCCACcggccgccgccgccgccgccccCACGTAGCCCATCGAGCCATGGGTTTTCTCCTCCTCCGCCTCCACCCCAGCGGTTGTCTCCAGCCAAGTCATCATCAAACTCGGATTCCTCCGGTGCATCTGGGGACAGTGGAAGCCCATCGTCGAGCACGCCACTTATAATAGGAGTTGCAGCTGGAGTTGGGATTTTGCTCCTTCTTCTCATAGTTGTCTTTGCGTGTtcaagaaggaagaagaaatcTCAGCCTTCCGTTCATTACTTTGCTAATCAACCCGGCGATGACGGCCATTATAAACGTGCAGCGGCAGGTCCAAATCAGTATAACGGTGAGCACGTTCTTAATATTCCTCCACCTCCAGGAGCAGGTTGGGGAGCAGCAACCCAAGCAGCTTCCCAGCGGGTTAGTAGTGACATGAGCAACTCCAGTTTCTCTGGGCCCCATGGTCCCGTGTTGCCACCCCCACACCCTACAGTGGCCCTTGGATTCAACCAAAGCTCCTTTACTTATGACGAGCTCTCAGCTGCCACTGGTGGCTTTGCCCAACGCAACCTGGTGGGTCAAGGTGGGTTCGGATATGTGCACAAAGGTGTTCTACCCAATGGTAAAGAAATTGCGGTGAAGAGCCTCAAATCCACTGGGGGCAAAGGAGACAGAGAATTCCAAGCCGAGGCTGATGTTATCAGCCGTGTCCATCATCGCCATCTCGTCTCACTTGTCGGGTATTGCATTTCAGAAAGCAAAAAGCTGCTGGTATATGAGTTTGTGCCTAACAAGACCCTTGAATTCCACCTTCATGgaAAGGGTCGACCTGTCATGGATTGGGATACCAGGATCAAAATTGCGATTGGATCGGCCAAAGGACTTGCTTATTTACATGAGGACTGTCACCCTCGTATCATTCACCGAGACATAAAGGGTGCAAACATTCTACTTGAAAACAACTTCGAAGCCAAAGTGGCAGATTTTGGGTTGGCAAAGTTTAGTCAAGACACTAACACCCATGTTTCAACTCGTGTAATGGGAACATTCGGGTATTTGGCTCCTGAGTATGCATCAAGTGGTAAGCTAACTGACAAATCTGATGTCTTCTCGTTCGGTATTATGCTATTGGAGCTCGTGACAGGTCGGCGCCCAGTGGCCAGTACTGGTCAATATGAAGATAATTTGGTTGACTGGGCTAGACCGCTTTGTACAAAGGCAATGGAAAATGAAACTTTTGATGGACTAGTGGATCCACGTTTAGAGGATAATTATGACAAGCAGCAAATGGCTTGTATGGTGGGTTGTGCTGCTGCTAGCGTTAGGCACTCATCAAGGAAACGCCCAAGAATGAGTCAgATTGTACGAGTGCTGGAGGGTGATGTCTCAGTAGATGTCCTTAATCATGAGGGAGTGAATGGGCAAAGTGCACTCTACAGCAGCGCAAGCGGCGAGTATGGTGCGGTCTCATACGGTGCTGACATGATGAAGTTCAGGAAACTAGCATTAGATAGCGGCAAGGGAAGCACTGAGTTTGGTGCATCTGGAACGAGTGAATATGGCCTTAACCTTTCCATCTCAAGCAGTGAACAATCAACTACTGAACATGGCAGGAGGACAGAAGGCCGGATGCACACTCCTTAA 1923 0.4654 MSSNSDTNSPTPPPPDSSSSQSPPPPSQGNSSSPPPPSQDNSSPPPSSPPPSSPPPQSSSSPPPPSPPPPENDKNSPPPPSDSSPSPPPPPPDKESGSHRPPPPPPPRSPSSHGFSPPPPPPQRLSPAKSSSNSDSSGASGDSGSPSSSTPLIIGVAAGVGILLLLLIVVFACSRRKKKSQPSVHYFANQPGDDGHYKRAAAGPNQYNGEHVLNIPPPPGAGWGAATQAASQRVSSDMSNSSFSGPHGPVLPPPHPTVALGFNQSSFTYDELSAATGGFAQRNLVGQGGFGYVHKGVLPNGKEIAVKSLKSTGGKGDREFQAEADVISRVHHRHLVSLVGYCISESKKLLVYEFVPNKTLEFHLHGKGRPVMDWDTRIKIAIGSAKGLAYLHEDCHPRIIHRDIKGANILLENNFEAKVADFGLAKFSQDTNTHVSTRVMGTFGYLAPEYASSGKLTDKSDVFSFGIMLLELVTGRRPVASTGQYEDNLVDWARPLCTKAMENETFDGLVDPRLEDNYDKQQMACMVGCAAASVRHSSRKRPRMSQIVRVLEGDVSVDVLNHEGVNGQSALYSSASGEYGAVSYGADMMKFRKLALDSGKGSTEFGASGTSEYGLNLSISSSEQSTTEHGRRTEGRMHTP 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g4114 640 ProSiteProfiles Protein kinase domain profile. 279 565 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g4114 640 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK5 11 603 - -
Ssu1g4114 640 MobiDBLite consensus disorder prediction 1 148 - -
Ssu1g4114 640 MobiDBLite consensus disorder prediction 603 626 - -
Ssu1g4114 640 MobiDBLite consensus disorder prediction 180 209 - -
Ssu1g4114 640 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 11 603 - -
Ssu1g4114 640 ProSitePatterns Serine/Threonine protein kinases active-site signature. 399 411 IPR008271 GO:0004672|GO:0006468
Ssu1g4114 640 Gene3D Transferase(Phosphotransferase) domain 1 355 563 - -
Ssu1g4114 640 Pfam Protein tyrosine and serine/threonine kinase 283 550 IPR001245 GO:0004672|GO:0006468
Ssu1g4114 640 Gene3D Phosphorylase Kinase; domain 1 256 354 - -
Ssu1g4114 640 ProSitePatterns Protein kinases ATP-binding region signature. 285 307 IPR017441 GO:0005524
Ssu1g4114 640 MobiDBLite consensus disorder prediction 127 148 - -
Ssu1g4114 640 MobiDBLite consensus disorder prediction 8 126 - -
Ssu1g4114 640 SUPERFAMILY Protein kinase-like (PK-like) 259 551 IPR011009 -
Ssu1g4114 640 SMART serkin_6 279 524 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g4114 640 MobiDBLite consensus disorder prediction 602 640 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g4114 Ssu-Chr1 100457351 100461191 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g4114 257 596 Trihelix Transcription Factor Family AT1G70460 61.850 9.20e-147 440
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Ssu1g4114 PK_Tyr_Ser-Thr 5.5e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g4114 - - gmx:100806299 806.979