Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g4104 ATGTCGAGCTCATCGGGGTATCCGGGCTTTTCCGGCCACCAGCCGGCGAAGTCGCCGGCGGAGAAGTTCACGTTCTCTCAGACTTGTAGTCTTTTGGGCCAATACCTCAAGGAGAAGGGCAGCTTTGGAGACCTTACCCTTGGGATGACTTGCACAGTCGAAACAAACgGTTTCTCTGAGACATCATGTCACTCTGCAACAACCTTGGGGTTGTTTCCCTCAATCATGACGTCACGAAACCTGACCGCTATGGCTTTCCTCTCTCCGCAGACTGTTTATCCTCGCCACTCAGAGGTTCCAACCATTGTTAAATCAAGgtCTATGGAGAAGGAGCCTAAAGCTGCTCAGTTGACAATTTTTTATGCTGGGCAAGTTGTTGTGTTTGATGATTTTCCTGCTGATAAAGTGGAGGAGATAATGTCATTGGCCAGCAAGGAAAAATCCCAAAGCCAAAGCCAGAACTCCTCTGCATATGCTCGCACTCATAACCGACAAGGGAATCATCCTTCAATTATTCCTAATATCATCCCTCAAACACCAGCCAGACCAAGTGACTTGCCAATTGCTAGGAAAGCTTCACTTCATCGGTTCCTTGAGAAGAGGAAAGATAGGATTGCTGCCAAAGCGCcatatcaaacaaataattCCAACTATGACCCTAATAAGCCGGTTGAATCATTAGGTGCTAAATCAACACACACCTGA 705 0.4624 MSSSSGYPGFSGHQPAKSPAEKFTFSQTCSLLGQYLKEKGSFGDLTLGMTCTVETNGFSETSCHSATTLGLFPSIMTSRNLTAMAFLSPQTVYPRHSEVPTIVKSRSMEKEPKAAQLTIFYAGQVVVFDDFPADKVEEIMSLASKEKSQSQSQNSSAYARTHNRQGNHPSIIPNIIPQTPARPSDLPIARKASLHRFLEKRKDRIAAKAPYQTNNSNYDPNKPVESLGAKSTHT 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g4104 234 Pfam Jas motif 187 212 IPR018467 -
Ssu1g4104 234 ProSiteProfiles Tify domain profile. 110 145 IPR010399 -
Ssu1g4104 234 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 19 221 IPR040390 -
Ssu1g4104 234 Pfam tify domain 111 144 IPR010399 -
Ssu1g4104 234 MobiDBLite consensus disorder prediction 144 185 - -
Ssu1g4104 234 MobiDBLite consensus disorder prediction 144 174 - -
Ssu1g4104 234 MobiDBLite consensus disorder prediction 205 234 - -
Ssu1g4104 234 SMART tify_2 110 145 IPR010399 -
Ssu1g4104 234 MobiDBLite consensus disorder prediction 209 234 - -
Ssu1g4104 234 PANTHER PROTEIN TIFY 10A-LIKE 19 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g4104 Ssu-Chr1 100313782 100315526 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g4104 1 212 Tify Gene Family AT1G19180 43.290 7.24e-47 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Ssu1g4104 tify 4.9e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g4104 K13464 - gmx:100802800 333.569