Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g4100 ATGGAGGATGGTGAGAAACCCACGGATAACTCCCATGGCATTGCTGATATGGATGTTGTTGATGCCGCTTTGCAAAGCCAACATGTGGCTTCTTCCCCTACTCACAATTCCCCTGCTCAGCTACAACAGGATCAAGTAATGGTCCAACAGGGTGGTGATGGCAAAAACGGCGATTCTGATCCTAGTCATGTGCCAGAAACCGGTGCAATTAGTGAGAATCAGTTTGAACTTGAAGATGCTAAGACCGTTTCGCGTCAGGAACTGATCACTCCAAAGCCTAAGGAAAAGAATGTCAGAGAAATGAAGAATGTGCTAAATGATACTGAGATGACTGATTATGATGAGTATGGCACACCTCTGGATCGAGAAACATTTATGAAAGAGCTTGAGAATTTCTACAGAGAGCGGTCCATGGAATTTAAGCCTCCTAAGTTTTATGGGGAGCCACTAAATTGCCTTAAGTTGTGGAGAGCTGTTATCAGACTAGGTGGCTATGATGTGGTAACTGGATCCAAGTTGTGGCGGCAAGTAGGAGAGTCTTTCCACCCCCCAAAGACTTGCACTACAGTTTCATGGACGTTTAGAATCTTTTATGAGAAGGCACTTTTAGAGTATGAAAAGCATAAGAGAGACATTGGGGAGCTACAGCTCCCTGTTGGATCATTTCATCAATCTTCAAATGTGGAAAAAGAgACTGCTGTTTACCAGGCTTCAGGCTCAGGTAGGGCGCGGAGGGATGCAGCAGCACGTGCAATGCAAGGTTGGCATGCTCAGCGCCTTCTTGGATATGGTGAGGTTGCTGAGCCAGTTATTAAGGACAAGAACTTCAGTTCCACACCAAAGCGTGAAAAGAACCTAAAAAGTATTGGTATGATTAATAAACAGAGGACGCCATCTGGTCTGGAGCATGCTGAGAAAGTTGCAAATATCGAAGGAGATCGACAACTGGTCACAGCAGTAATGGACATTGGACCCCCAGCTGACTGGGTGAAGATCAACGTGAGGGAAACTAAGGATTGTTTTGAGGTGTATGCACTAGTTCCTGGGCTCCTTCGTGAGGAAGTGCGAGTGCAATCAGATCCAGTTGGACGTCTTGTTATAACTGGTCTGCCAGAACACATTGACAATCCATGGGGAATTACCCCCTTCAAAAAGGTTGTGAATTTACCTGCAAGAATTGATCCGCTTCAGACATCTGCTGTTGTTAGTTTGCATGGTCGACTATTTGTACGCGTTCCTTTTGAGCAGGGAGCTGTGTGA 1260 0.4556 MEDGEKPTDNSHGIADMDVVDAALQSQHVASSPTHNSPAQLQQDQVMVQQGGDGKNGDSDPSHVPETGAISENQFELEDAKTVSRQELITPKPKEKNVREMKNVLNDTEMTDYDEYGTPLDRETFMKELENFYRERSMEFKPPKFYGEPLNCLKLWRAVIRLGGYDVVTGSKLWRQVGESFHPPKTCTTVSWTFRIFYEKALLEYEKHKRDIGELQLPVGSFHQSSNVEKETAVYQASGSGRARRDAAARAMQGWHAQRLLGYGEVAEPVIKDKNFSSTPKREKNLKSIGMINKQRTPSGLEHAEKVANIEGDRQLVTAVMDIGPPADWVKINVRETKDCFEVYALVPGLLREEVRVQSDPVGRLVITGLPEHIDNPWGITPFKKVVNLPARIDPLQTSAVVSLHGRLFVRVPFEQGAV 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g4100 419 SUPERFAMILY ARID-like 107 216 IPR036431 GO:0003677
Ssu1g4100 419 CDD ARID 121 206 - -
Ssu1g4100 419 MobiDBLite consensus disorder prediction 1 79 - -
Ssu1g4100 419 CDD ACD_sHsps_p23-like 334 413 - -
Ssu1g4100 419 Pfam ARID/BRIGHT DNA binding domain 122 206 IPR001606 GO:0003677
Ssu1g4100 419 SUPERFAMILY HSP20-like chaperones 326 414 IPR008978 -
Ssu1g4100 419 SMART ARID_2 116 206 - -
Ssu1g4100 419 Gene3D - 120 217 IPR036431 GO:0003677
Ssu1g4100 419 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 318 419 IPR002068 -
Ssu1g4100 419 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 5 32 416 - -
Ssu1g4100 419 SMART bright_3 120 211 IPR001606 GO:0003677
Ssu1g4100 419 MobiDBLite consensus disorder prediction 25 56 - -
Ssu1g4100 419 ProSiteProfiles ARID domain profile. 119 210 IPR001606 GO:0003677
Ssu1g4100 419 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 32 416 IPR045147 GO:0006357
Ssu1g4100 419 Gene3D - 313 418 IPR008978 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g4100 Ssu-Chr1 100231272 100242253 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g4100 7 416 ARID Transcription Factor Family AT1G76510 61.165 1.97e-164 467
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Ssu1g4100 ARID 2.8e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g4100 - - gmx:100797486 741.11