Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g4099 ATGGCTGCTTACAACAACCATATTGATAGAAGTGAAGCCCAATTAGGTGGTTTTGTTGCTCCACAGGCTTTGATGAGACCAGGCCTACACCTCCAGGCCCAGAAGCCCACGCAACACTCCGACGACGACGGAGAAGGGGCCTCCTTCACGGGGCGCCGCCCTCGCGGGCGGCCTCCTGGGTCCAAGAACAAGCCCAAGCCACCCGTCGTGATCACTCGCGACAGCCCCAATGCGCTGCGCTCGCACGTGCTGGAAGTCTCCCCCGGCGCTGACGTGGCGGAGAGTCTCTCCACCTACGCGCGGCGCAGGGGGAGGGGCGTGTGCGTGCTCAGCGGCTCCGGCGCGGTGGCCAACGTCGCGCTCCAGCAGCCGGCGGGGAGGGTGGTCACGCTCCACGGGCGGTTCGAGATGGTTTCCATAACGGGGACGGTGCTCCCGCCGCCGGCGCCGCCGGGCTCGGACGGATTGTCGGTTTATCTGTCGGGGGCGCAGGGGCAGGTGGTTGGGGGCATCGTGGTGGCGCCTCTGGTGGCTTCGAGTCACGTGGTGTTGGTGGCGGCTTCCTTTGCTAACGCCATGTTCGAAAGGTTACCCTTGCCCTTGAATCACCATGATGATCGTGATCATGATCATGATCATGATCTTGATGATCAAGTTCCGCAAGTGGCACCACGTGGCGTGGCGGGAACGGGACAGGTGGCAGATGGAAGGAACTATCCCTTCTCCGCGTCGCTGCAGGGTGACCCATTTGGATGGGGTGGAAGTGGAACTGCAATTGCGCCACCCTAA 789 0.6299 MAAYNNHIDRSEAQLGGFVAPQALMRPGLHLQAQKPTQHSDDDGEGASFTGRRPRGRPPGSKNKPKPPVVITRDSPNALRSHVLEVSPGADVAESLSTYARRRGRGVCVLSGSGAVANVALQQPAGRVVTLHGRFEMVSITGTVLPPPAPPGSDGLSVYLSGAQGQVVGGIVVAPLVASSHVVLVAASFANAMFERLPLPLNHHDDRDHDHDHDLDDQVPQVAPRGVAGTGQVADGRNYPFSASLQGDPFGWGGSGTAIAPP 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g4099 262 MobiDBLite consensus disorder prediction 31 76 - -
Ssu1g4099 262 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 37 254 IPR014476 GO:0003680
Ssu1g4099 262 SUPERFAMILY AF0104/ALDC/Ptd012-like 76 200 - -
Ssu1g4099 262 MobiDBLite consensus disorder prediction 204 240 - -
Ssu1g4099 262 Gene3D - 79 208 - -
Ssu1g4099 262 ProSiteProfiles PPC domain profile profile. 76 210 IPR005175 -
Ssu1g4099 262 MobiDBLite consensus disorder prediction 204 219 - -
Ssu1g4099 262 MobiDBLite consensus disorder prediction 36 50 - -
Ssu1g4099 262 CDD DUF296 80 189 IPR005175 -
Ssu1g4099 262 Pfam Plants and Prokaryotes Conserved (PCC) domain 80 190 IPR005175 -
Ssu1g4099 262 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 29 37 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g4099 Ssu-Chr1 100217395 100218183 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g4099 50 199 AT-hook Motif Nuclear Localized (AHL) Family AT1G76500 73.292 9.93e-69 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g4099 - - gmx:100778715 325.479