Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g4096 ATGGCGTACCAAGCGATCCAGGGCCCGAGTTCGGGATCGAGTTCGAGTTCGGGGTTTCAGTTATTGAATTCTCCTTTCGGAGACACCACTTACACCAAGGTCTTCGTCGGAGGATTGGCCTGGGAGACTCAGAGCGAAACCATGCGCCGCTACTTCGAGCAGTTCGGCGAGATTCTCGAGGCCGTCGTCATCACCGATAAGAACACGGGACGATCCAAGGGCTATGGTTTTGTGACTTTCCGGGATTCCGAGGCTGCAAGGAGAGCGTGTGCTGATCCAACTCCTGTTATTGACGGTAGAAGGGCGAATTGTAACTTGGCTTCACTTGGTCGACCACGGCCCCCTCTGCCTTATGgacGGATAAGACCTACCTCCCCTTATGTTGGAAGTTTGCAACCAACCCGTAGTGCTTATGTTGGAGGTTTTGGCTACCAGCAACCACTTTCCTACAGCTATCAACAAGGATTGGTTTACCCTCCTTATGGGTATACGACATATGGACCTGAGTACATCTACCCACAGAGTCTGTACAACCCATACATGGGGCAACAGTACCTTCAGATATATGGAGTGCCTGGGGCAGTGAATCCAACTGTTTATCCTTATGGACAATTGGGTCAGGCTATTGCTAGTAGTCATGGTTATTCGGCAATGCAGGGTTATACTGTACCAGGTCATCAAATTGTGCCCTATGGTGGATCCAATGTTAATGCCATAACAACTTCACCTATGCCTGCTATTCAAGCTTCATATCCTAGTGGAATTGCTGCACCAGTTCCTGGCCAACCACAATTTATTGTTCCTGCTCCTTCTCCTCAGTTTATGCAAGGTAGCGGTCCTGATCAAACAGCTGGGTGA 858 0.4942 MAYQAIQGPSSGSSSSSGFQLLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDSEAARRACADPTPVIDGRRANCNLASLGRPRPPLPYGRIRPTSPYVGSLQPTRSAYVGGFGYQQPLSYSYQQGLVYPPYGYTTYGPEYIYPQSLYNPYMGQQYLQIYGVPGAVNPTVYPYGQLGQAIASSHGYSAMQGYTVPGHQIVPYGGSNVNAITTSPMPAIQASYPSGIAAPVPGQPQFIVPAPSPQFMQGSGPDQTAG 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g4096 285 SUPERFAMILY RNA-binding domain, RBD 31 144 IPR035979 GO:0003676
Ssu1g4096 285 Gene3D - 27 111 IPR012677 -
Ssu1g4096 285 PANTHER RNA-BINDING PROTEIN 38-LIKE ISOFORM X1 1 281 - -
Ssu1g4096 285 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 32 109 IPR000504 GO:0003723
Ssu1g4096 285 SMART rrm1_1 33 105 IPR000504 GO:0003723
Ssu1g4096 285 CDD RRM_RBM24_RBM38_like 32 107 - -
Ssu1g4096 285 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 34 90 IPR000504 GO:0003723
Ssu1g4096 285 PANTHER BOULE-RELATED 1 281 IPR037366 GO:0003729
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g4096 Ssu-Chr1 100161998 100164906 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g4096 21 108 C2H2 Transcription Factor Family AT2G19380 43.182 2.07e-17 80.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g4096 - - gmx:100782606 526.939