Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g4093 ATGCACAATCCCCAACCGCAACCTCAGCCTCAACTACATCAAAACATGCGTTTGGACTATGCTGCTGACGGCACCGCTGTTTTTGCCGCCCCTACCGTCAACATGAACGGCGGAGAATCCCCTGCAGCAGCGCTGCCTCCGGGCCTGGGCCTGGCCCAGCCCCAGCCCCAGCCCCAGCCCATGGTGGGTTGCTCAGAGCCACTCAAGAGAAAGAGGGGAAGGCCCAGGAAATATGGCCCTGACGGTGGCATGGCCTTGTCCTTGACCAATACGCCTCCTCCAGGCGCCGCCGCTGCCTCCGCCGTGCCGGTTAGCCAGTCCGGCGGAGCATTTCCACCGGCTCCTCTTTCGGATTCTGCCTCAGCCGGTTCCGGGAAGCGCAGGGGCAGGCCTCGCGGTTCGGTCAATAAGAAAAGCTCAAAGTTTTCCGGACCAGCAGCTCTGTTTACTCCTCATGTCATTACCGTGAAAGCTGGAGAGgATTTGTCATCAAGAATTATGGCAGTTTCCCAGAGTAGTTCAAGAAATGTTTGCATCTTAACAGCAAATGGAGCCATATCTAATGTGACACTTCGACAACCTGCCTCATCTGGTGGAACTGTAACATACGAGGGGCGATTTGAGATCCTGTCACTTGGTGGCTCTTTGTTTCTTGCTGAAAATGGTGCTCATGGCGGAAGGATTGGGGGCCTGAATGTGTCCTTGTCAGGGCCAGATGGCCGTGTCTTGGGTGGCGGAGTTGCGGGACTTTTGATAGCTGCTTCCCCTGTTCAGATAGTTTTGGCGAGCTTTGTTTCAGAAGTTCGCAAGCAAGCCAAGTCTGcaaagagaatggaaaatgcATCTGCCCCAGCAAAGGCTTCCACAGCAGCAGGCCAAAGCAGCTCACCATCAAGGGGCACATTGAGTGAGTCTTCAGGTGGGGCTGGGAGTGGGAGCCCGCTAAACCAAAGCACAGGAGCCtgcaacaacaacatcaacaacaataacccaACACAAGGCTTTTCAGGCATGCCCTGGAAGTAG 1026 0.5322 MHNPQPQPQPQLHQNMRLDYAADGTAVFAAPTVNMNGGESPAAALPPGLGLAQPQPQPQPMVGCSEPLKRKRGRPRKYGPDGGMALSLTNTPPPGAAAASAVPVSQSGGAFPPAPLSDSASAGSGKRRGRPRGSVNKKSSKFSGPAALFTPHVITVKAGEDLSSRIMAVSQSSSRNVCILTANGAISNVTLRQPASSGGTVTYEGRFEILSLGGSLFLAENGAHGGRIGGLNVSLSGPDGRVLGGGVAGLLIAASPVQIVLASFVSEVRKQAKSAKRMENASAPAKASTAAGQSSSPSRGTLSESSGGAGSGSPLNQSTGACNNNINNNNPTQGFSGMPWK 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g4093 341 ProSiteProfiles PPC domain profile profile. 145 285 IPR005175 -
Ssu1g4093 341 Pfam Plants and Prokaryotes Conserved (PCC) domain 151 265 IPR005175 -
Ssu1g4093 341 MobiDBLite consensus disorder prediction 286 341 - -
Ssu1g4093 341 SUPERFAMILY AF0104/ALDC/Ptd012-like 149 270 - -
Ssu1g4093 341 Gene3D - 151 281 - -
Ssu1g4093 341 CDD DUF296 150 264 IPR005175 -
Ssu1g4093 341 PANTHER OS08G0512400 PROTEIN 10 339 - -
Ssu1g4093 341 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 10 339 IPR039605 GO:0003680
Ssu1g4093 341 SMART AT_hook_2 69 81 IPR017956 GO:0003677
Ssu1g4093 341 SMART AT_hook_2 125 137 IPR017956 GO:0003677
Ssu1g4093 341 MobiDBLite consensus disorder prediction 32 142 - -
Ssu1g4093 341 MobiDBLite consensus disorder prediction 275 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g4093 Ssu-Chr1 100142875 100145793 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g4093 23 341 AT-hook Motif Nuclear Localized (AHL) Family AT2G33620 48.665 5.64e-77 238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g4093 - - pvu:PHAVU_009G008300g 428.328