Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g4090 ATGTTGGCAATGGAAGAGGTGCTGTGTGAACTTAGTGATCATGAAAAGAGAAACGAGCAAGGTCTGCCACCGGGTTTCAGGTTTCACCCCACTGATGAAGAACTTATAACCTTTTATTTGGCTTCAAAGGTCTTTAATGGGAGCTTCCCTACTGTCAAGTTTGCTGAGGTTGACCTCAATAGATGTGAGCCCTGGGAACTTCCAGATGTGGCAAAGATGGGGGAGAGGGAGTGGTATTTGTTCAGCTTGAGGGACAGAAAATACCCTACTGGACTAAGAACAAACAGAGCCACTGGGGCTGGGTACTGGAAAGCCACTGGGAAGGACAAGGAAGTGTACAGTGCATCGAGTGGAACCCTACTTGGAATGAAGAAGACCCTTGTTTTCTACAAAGGCAGGGCCCCTCGAGGAGAAAAGACCAAATGGGTCATGCACGAGTACCGTTTGGACGGTCACTTTTCCCTTCCTCACCCTCACACTCACACCTCCAAGGAGGAGTGGGTGATATGCAGGATATTTCATAAATCTGGGGAAAAGAGGACTCCACTGCTCCAAGTCCAAGGACATTCGGATGCTACTTCGTCCCCAGCAAAAAGTTCTTTACCCCCATTACTTGCAAGCCCAACTTCCTTTAAACTAGAATGTCAATCCCAAAGCCCGATCCTGATTCACCACCATCAAGACCAAAATGACCTCTCTCACCCTCATCTTTTCCCATTGCATGCATACCCAAACGCTGCTGCCACTAGTGCATCATCAGAAATCACCAATGTCAGAAACCACCCATCATTTTCGGACCTATTATTCAAGCCCCACCTCTCACACCAAAATTGCACCCTGAAGGCCAAGGAACAAGCTATTCCAAAACTAAGCAAAACGGAGGACGCTACATTCTATCAATATCAATCACTAGATGACGTTAACAACTTTCGCTGGGTGAACAAGTTGAACCAAAATCCAAGCAATTTCCTGAACCCACCATTCCCTCTTGAGGTGGATGCTGGGCTGATGGCTTTCTCAGGAGCTGTAAGTGCAAATGCTGAAGTTAGGGACATGTCCACTTCAACGGCCTTTAATAGGCAGCAGGTGCTAGATGCTGCTCATACCGGAATAGATTCTTGGCCTCTGGCCCAGCATGTTTaa 1143 0.4733 MLAMEEVLCELSDHEKRNEQGLPPGFRFHPTDEELITFYLASKVFNGSFPTVKFAEVDLNRCEPWELPDVAKMGEREWYLFSLRDRKYPTGLRTNRATGAGYWKATGKDKEVYSASSGTLLGMKKTLVFYKGRAPRGEKTKWVMHEYRLDGHFSLPHPHTHTSKEEWVICRIFHKSGEKRTPLLQVQGHSDATSSPAKSSLPPLLASPTSFKLECQSQSPILIHHHQDQNDLSHPHLFPLHAYPNAAATSASSEITNVRNHPSFSDLLFKPHLSHQNCTLKAKEQAIPKLSKTEDATFYQYQSLDDVNNFRWVNKLNQNPSNFLNPPFPLEVDAGLMAFSGAVSANAEVRDMSTSTAFNRQQVLDAAHTGIDSWPLAQHV 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g4090 380 Pfam No apical meristem (NAM) protein 23 149 IPR003441 GO:0003677|GO:0006355
Ssu1g4090 380 PANTHER PROTEIN CUP-SHAPED COTYLEDON 3-LIKE 10 359 - -
Ssu1g4090 380 SUPERFAMILY NAC domain 17 175 IPR036093 GO:0003677|GO:0006355
Ssu1g4090 380 Gene3D NAC domain 31 179 IPR036093 GO:0003677|GO:0006355
Ssu1g4090 380 ProSiteProfiles NAC domain profile. 22 175 IPR003441 GO:0003677|GO:0006355
Ssu1g4090 380 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 10 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g4090 Ssu-Chr1 100113450 100116066 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g4090 1 181 NAC Transcription Factor Family AT1G76420 74.033 1.19e-97 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Ssu1g4090 NAM 7.2e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g4090 - - gmx:100780313 544.658