Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g4086 ATGACTCGTCCCTTCAGATATTTAGGCGAGCAAAACTCGTCCGGCGACCCCGCTGTCGTCGATTCCGACTTCGTCGTCATCCTCGCCGCCCTCCTCTGCGCTCTCATCTGCGTCCTCGGCCTCGTCGCCGTCGCGCGCTGCGGCTGTCTCCGCCGCCTCCGTCTCTCCTCCTCCGCCACTCCGCAGCCTCCTCCTCCCGCCGCCGCCAACAAGGGCGTCAAGAAGAAGGTCCTCCGCTCCCTCCCGAAGCTCACCGCCACCGCCGAATCCGCGGTGAAGTTCGCCGATTGCGCGATCTGTCTCTCGGAATTCGCCGCCGGAGACGAAATCCGAGTGCTGCCTCAGTGCGGCCATGGCTTCCACGTGAGCTGCATCGACGCGTGGCTCAGATCGCATTCGTCGTGTCCGTCGTGCCGTCAGATTCTAGTGGTTTCTCGGTGCGACAAGTGCGGCGGAATCCCTGCTCCGGCGAGCTCCAGCACCGCGCCGCCGCCGGACTCCGAGGCCAGATTCAAGATCGGAGTTGGTTTGGCCATGGTATGTCCTACGTGTTATGGCACCATCGATGTCTCATTTTACTATGAAAATGATGAGAAAACCGGTTCAAGATGGAGTTAA 618 0.6149 MTRPFRYLGEQNSSGDPAVVDSDFVVILAALLCALICVLGLVAVARCGCLRRLRLSSSATPQPPPPAAANKGVKKKVLRSLPKLTATAESAVKFADCAICLSEFAAGDEIRVLPQCGHGFHVSCIDAWLRSHSSCPSCRQILVVSRCDKCGGIPAPASSSTAPPPDSEARFKIGVGLAMVCPTCYGTIDVSFYYENDEKTGSRWS 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g4086 205 SUPERFAMILY RING/U-box 79 145 - -
Ssu1g4086 205 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 143 IPR013083 -
Ssu1g4086 205 PANTHER RING-H2 FINGER PROTEIN ATL8 1 175 - -
Ssu1g4086 205 CDD RING-H2_PA-TM-RING 96 139 - -
Ssu1g4086 205 ProSiteProfiles Zinc finger RING-type profile. 97 139 IPR001841 -
Ssu1g4086 205 SMART ring_2 97 138 IPR001841 -
Ssu1g4086 205 Pfam Ring finger domain 96 139 IPR001841 -
Ssu1g4086 205 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 1 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g4086 Ssu-Chr1 100049187 100050171 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g4086 5 174 C3H Transcription Factor Family AT1G20823 63.934 6.22e-65 197
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g4086 - - gmx:100794614 265.388