LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu1g4075	ATGAATTTGTTTTGGGTTGTTTGTTGGGTGGTCTGGTGTTTGGGAGTATCAGTATCTCCTGCACATGTGTCATCCTCAAGACCCGCCGTTGTGAACATTGGAGCAATCTTCAACATCAATTCCGTTATTGGGAAAGTGGCTAAAATTGCTTTGGAGGAAGCGGTGAAGGATGTAAACGCCAACACTAGCATTTTACATGGAACTAAACTTGTTCTCACTATGCAAAATTCCAATTCCAGTGGTTTTATAGGCATGGTTCAAGCTTTGCGGTTCATGGAGACTGATGTGGTTGCCATAATAGGGCCGCAGTCTTCTGTGGTTGCCCACATAATATCCCATGTTGCAAATGAACTCAAGGTTCCTTTATTGTCATTTGCTGCAACAGACCCTACCCTGTCGTCGCTGcagtttcctttttttgtgaGGACAACACAGAGTGATTTGTACCAAATGAAGGCAGTTGCTGAAATCATTGATTATTATGGTTGGAAGGAGGTGATTGCCATATATGTGGATGATGATTATGGACGCAATGGTGTGGCCGCATTGGATGATGAACTAGCTGCCAGGCGCTGTAGAATCTCCTTCAAGGAAGGGATTAAATCGGGAACTGAAGTTGACCGGGGCGAGATTACAAGTTTACTTGTGAAAGTGGCACTAATGCAATCTCGGGTCATTGTTCTCCATGCACAAACTGATTCTGGATTTATGGTTTTCAATGTGGCGCGTTATCTTGGGATGACAGACAATGGCTATGTGTGGATAGCCACGGACTGGCTCTCTTCTCTTCTGGATTCTTCTTCTCTCCCAGAAGAGACAATGGATGTTCTGCAGGGAGTACTTGTTTTGCGCCAGCATACAGCTGATTCAGATAGAAAAAGGGCATTTCTCTCTAGGTGGAACAAGTTAACTGGTGGCTCTTTGGGGTTGCATTCTTATGGTCTCTATGCTTATGATTCTGTTTGGCTGGTTGCACGTGCTATTGATGCTTTTTTCAATCAGGGTGGGATTGTTTCGTGTACCAATTACACAAGTTTAGCTGGTGATCAGGGAGGTGATCTTAACCTTGATGCGATGAGTATTTTTGACAACGGAACGCTTCTGTTGAAGGACATATTGCAGAGTGATTTTTTTGGATTAACAGGTCGAATGAAATTTGAACCAGACCGGTCTCTTGTTCATCCTGCCTATGACATCAATAATGTGGTTGGAAGTGGCCTTAGGAGGGTTGGTTACTGGTCCAACTATTCTGGTTTATCAATTGTATCTCCTGAGATATTGTATGCAAAGCCACCTAATAGATCAATTGCAAACCAGAAGCTATACAGTGTGATATGGCCTGGAGAAACATTATCTAAACCCCGTGGATGGGTCTTCCCAAATAATGGTAGACAATTGAGAATTGGTGTGCCTATCCGAGTTGGTTACCGTGAATTTGTCTCACCAGTGCAGGGAACTGAGATGTTTAAAGGTTTCTGTATTGATGTATTCACAGCAGCTGTAAACTTGTTGCCTTATGCTGTTCCATACCGTTTTGTCCCATTTGGAGACGGCCGCAAAAATCCAAGCTACACAGAACTTGTCAGCTTAATCACAACTGGTTACTTTGATGGTGCCATTGGTGACATAGCTATTGTCACAAATCGAACAAGGATTGTAGATTTTACACAACCATATGCTGCATCTGGACTTGTTGTGGTGGCTCCTTTCAAGAAAACCAATTCTGGCGGTTGGTCTTTCCTGCAGCCATTTACTCCTCTTATGTGGATTGTGACtgcttgtttcttctttttcattggGCTAGTTGTATGGATTCTGGAACACAGGATAAATGATGAGTTCAGGGGTCCACCTAGACAGCAAATTATAACCATGTTTTGGTTTAGCCTGTCAACTCTGTTTTTTTCCCACAGAGAGAATACCATGAGTAGTCTTGGTCGGTTGGTGATGCTCATATGGTTGTTTGTGGTTTTGATCCTCACTTCCAGCTACACTGCAAGTTTAACATCCATACTCACAGTGCAACAGTTATCTTCTCCTATCAGTGGAATAGATAACTTAAAAGCTAGTGATGAACCTATAGGGTTCCAAGTGGGTTCATTTGCAGAACATTACTTGATTCAAGATATTGGAATATCCAAATCTAGGCTTATTCCCCTTGGATCTCCAGAAGAATATGCTAAGGCCCTCCAGCTTGGTCCTAAAGAAAAAGGAGGTGTTGCTGCTATTGTTGATGAACGACCCTATGTTGAAATCTTCTTATCAACCCAGTGCACATTCAGGATTGTAGGTCAGGAGTTCACCAGAAGTGGCTGGGGTTTTGTGAGTATCTCTAGTTCTCTACCTTTTAGATTGATAATCACTGGaattaaagaaagatatttGAATGCGTTGCTAACAACCGTGATTGTTGTGtctttcaaaagttttaatGCGAAGAGTGAATCAAAATTTGGTTGGCCAAGTTGCTTTGTCTTTTCACCATCATTGTGCTctttaatatctaatatatgCATGTGGCTAACTCATCATTTAATCTATtcaataatgtttttcaaagactcgttttgttttaattatgttagCATGGATACTAGGTGA	2601	0.4045	MNLFWVVCWVVWCLGVSVSPAHVSSSRPAVVNIGAIFNINSVIGKVAKIALEEAVKDVNANTSILHGTKLVLTMQNSNSSGFIGMVQALRFMETDVVAIIGPQSSVVAHIISHVANELKVPLLSFAATDPTLSSLQFPFFVRTTQSDLYQMKAVAEIIDYYGWKEVIAIYVDDDYGRNGVAALDDELAARRCRISFKEGIKSGTEVDRGEITSLLVKVALMQSRVIVLHAQTDSGFMVFNVARYLGMTDNGYVWIATDWLSSLLDSSSLPEETMDVLQGVLVLRQHTADSDRKRAFLSRWNKLTGGSLGLHSYGLYAYDSVWLVARAIDAFFNQGGIVSCTNYTSLAGDQGGDLNLDAMSIFDNGTLLLKDILQSDFFGLTGRMKFEPDRSLVHPAYDINNVVGSGLRRVGYWSNYSGLSIVSPEILYAKPPNRSIANQKLYSVIWPGETLSKPRGWVFPNNGRQLRIGVPIRVGYREFVSPVQGTEMFKGFCIDVFTAAVNLLPYAVPYRFVPFGDGRKNPSYTELVSLITTGYFDGAIGDIAIVTNRTRIVDFTQPYAASGLVVVAPFKKTNSGGWSFLQPFTPLMWIVTACFFFFIGLVVWILEHRINDEFRGPPRQQIITMFWFSLSTLFFSHRENTMSSLGRLVMLIWLFVVLILTSSYTASLTSILTVQQLSSPISGIDNLKASDEPIGFQVGSFAEHYLIQDIGISKSRLIPLGSPEEYAKALQLGPKEKGGVAAIVDERPYVEIFLSTQCTFRIVGQEFTRSGWGFVSISSSLPFRLIITGIKERYLNALLTTVIVVSFKSFNAKSESKFGWPSCFVFSPSLCSLISNICMWLTHHLIYSIMFFKDSFCFNYVSMDTR	866

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu1g4075	866	Pfam	Ligand-gated ion channel	588	691	IPR001320	GO:0015276\|GO:0016020
	Ssu1g4075	866	Pfam	Bacterial extracellular solute-binding proteins, family 3	487	754	IPR001638	-
	Ssu1g4075	866	Gene3D	-	461	576	-	-
	Ssu1g4075	866	CDD	PBP1_GABAb_receptor_plant	32	422	IPR044440	-
	Ssu1g4075	866	PANTHER	GLUTAMATE RECEPTOR 3.3	18	776	-	-
	Ssu1g4075	866	PRINTS	Metabotropic gamma-aminobutyric acid type B receptor signature	104	132	-	-
	Ssu1g4075	866	PRINTS	Metabotropic gamma-aminobutyric acid type B receptor signature	44	60	-	-
	Ssu1g4075	866	PRINTS	Metabotropic gamma-aminobutyric acid type B receptor signature	317	329	-	-
	Ssu1g4075	866	SMART	GluR_14	467	843	IPR001320	GO:0015276\|GO:0016020
	Ssu1g4075	866	Pfam	Receptor family ligand binding region	49	404	IPR001828	-
	Ssu1g4075	866	Gene3D	-	49	394	-	-
	Ssu1g4075	866	Gene3D	-	577	705	-	-
	Ssu1g4075	866	PIRSF	IGluLR_plant	1	781	IPR017103	-
	Ssu1g4075	866	SUPERFAMILY	Periplasmic binding protein-like I	26	422	IPR028082	-
	Ssu1g4075	866	PANTHER	IONOTROPIC GLUTAMATE RECEPTOR	18	776	-	-
	Ssu1g4075	866	Gene3D	-	146	419	-	-
	Ssu1g4075	866	SUPERFAMILY	Periplasmic binding protein-like II	442	775	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu1g4075	Ssu-Chr1	99952046	99955364	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu1g4075	25	774	Ion Channels	AT1G42540	67.198	0.0	1084

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu1g4075	K05387		-	gmx:102661260	1414.44