Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g4073 ATGGGAATGGATTTTTCTACTCTGTCAGAGGACGAAGACAGTGCATTTGTGGTGGAAGATGAGAAATTGGGAGATTTGAATAATCTAAAACCAGTGACAAAGGGTAAGCCTCCGCGGCATGTTTCGAGTTTGAGGCACAGCGTTAGCACCACCAGATTGATGGCTGTAGCAGATTTGagtttggATGTGGGGGTTACTTGGAGCAAGTCATCTTCTGAAGAAAAGCCAGAGTTTCTTCCCATATTTCGGTCAGGAAGTTGTGCTGAAAGAGGACCTAAACAATATATGGAAGACGAACACATATGTATAGATGATCTTATTCAGCATATAGGTCCTGCTTCAACTATTCCTTTACCTGGAGCTTTTTATGGGGTGTTTGATGGCCATGGAGGTGCAGACGCAGCTTTGTTCATAAGAAATAACATCCTTAGATTTATAGTTGAGGACTCCCATTTTCCAACTTGCGTGGGGAAGGCAATTACAAGTGCGTTTCTGAAAGCTGATTACGAATTTGCAGATTCTAGTTCGCTTGATATCTCCTCTGGCACCACTGCTTTAACTGCTCTTGTATTTGGAAGGACCATGATAGTTGCCAATGCCGGGGATTGTCGAGCTGTACTGGGGAGGCGAGGTAGAGCAATTGAGATGTCAAAAGACCAGAAACCAGATTGCACTTCGGAAAGGCTAAGGATTGAGAAACTTGGCGGAGTGGTATACGATGGTTACTTGAATGGCCAGTTATCTGTTTCCCGTGCCTTGGGAGATTGGCACATGAAGGGTCCCAAGGGTTCTGCCTGCCCCTTGAGTGCCGAGCCAGAGGTGCAGGAAATCAACCTGACTCAGGATGATGAGTTCTTGATTATGGGCTGCGACGGCCTATGGGATGTAATGAGTAACCAGTGTGCTGTGACCATGGCAAGGAAAGAATTGATGATACATAATGATCCTCAAAGGTGTTCAAGAGAGTTGGTCAGAGAGGCTCTTAAGCGTAACTCGTGTGATAATTTGACAGTTATCGTGATATGTTTCTCCCCAGATCCTCCTCCTAGGATAGAGACGCCTCCTTCTCGAGTCAGGAGGAGTATATCAGCAGAGGGCCTCAATTTACTTAAGGGTGTATTGGACTGCTAG 1131 0.4536 MGMDFSTLSEDEDSAFVVEDEKLGDLNNLKPVTKGKPPRHVSSLRHSVSTTRLMAVADLSLDVGVTWSKSSSEEKPEFLPIFRSGSCAERGPKQYMEDEHICIDDLIQHIGPASTIPLPGAFYGVFDGHGGADAALFIRNNILRFIVEDSHFPTCVGKAITSAFLKADYEFADSSSLDISSGTTALTALVFGRTMIVANAGDCRAVLGRRGRAIEMSKDQKPDCTSERLRIEKLGGVVYDGYLNGQLSVSRALGDWHMKGPKGSACPLSAEPEVQEINLTQDDEFLIMGCDGLWDVMSNQCAVTMARKELMIHNDPQRCSRELVREALKRNSCDNLTVIVICFSPDPPPRIETPPSRVRRSISAEGLNLLKGVLDC 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g4073 376 ProSiteProfiles PPM-type phosphatase domain profile. 83 343 IPR001932 -
Ssu1g4073 376 SUPERFAMILY PP2C-like 76 344 IPR036457 -
Ssu1g4073 376 Pfam Protein phosphatase 2C 84 335 IPR001932 -
Ssu1g4073 376 Gene3D - 62 346 IPR036457 -
Ssu1g4073 376 SMART PP2C_SIG_2 98 343 IPR001932 -
Ssu1g4073 376 CDD PP2Cc 82 343 IPR001932 -
Ssu1g4073 376 ProSitePatterns PPM-type phosphatase domain signature. 122 130 IPR000222 GO:0043169
Ssu1g4073 376 PANTHER PROTEIN PHOSPHATASE 2C 10 365 IPR015655 GO:0004722|GO:0006470
Ssu1g4073 376 PANTHER PROTEIN PHOSPHATASE 2C 27-RELATED 10 365 - -
Ssu1g4073 376 SMART PP2C_4 73 341 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g4073 Ssu-Chr1 99916617 99919128 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g4073 1 375 PP2C-type Phosphatase Gene Family AT2G33700 71.279 0.0 558
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g4073 K14803 - gmx:100778015 697.967