Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g4066 ATGATGGCTGCGAGCTGGGATGGAAGTAATGACCCTGGCAGCCAGTCGGATGATAGCCTTCATTTTGAGAGGTTGCACATTGAGCCTCTTTACGATGCTTTTGTATGTCCGCTGACAAAGCAAGTTATGCGTGATCCTGTTACTTTAGAAAACGGACAGACTTTTGAACGTGAAGCAATTGAAAAATGGTTCAGGGAATGTAGGGAGAGTGGACGGAGACTGGTTTGCCCTTTGACTCTGCAGGAATTAAGAAGCACAGAACTGAATCCAAGTATGGCTTTGCGTAACACCATTGAAGAGTGGACTACCAGGAATGAAGCTGCACAGCTGGATATGGCTCGCCGGTCATTGAATATGGGGAGTCCAGAAAATGAAACTCTTCAGGCCTTAAAGTATGTCCAGCATATCTGCCGAAGAAGTCGGTCGAACAAACACATGGTCCGGAATACAGGGCTTATACCAATGATTGTTGACATGCTGAAGAGTAGCAGCCGCAAGGTTCGATGTAGAGCTCTGGAAACCCTTAGAGTTGTGGTAGAGGAAGATGATGAGAATAAGGAGTTGTTGGCTGAAGGGGATACTGTGCGTACCATAGTAAAATTCCTTTCGCACGAGCTTTCTAAAGAAAGAGAGGAGGCTGTCTCCTTGCTTTACGAGCTCTCAAAATCTGCAACCCTTTGTGAGAAGATTGGTTCAATCAATGGAGCCATTCTTATATTAGTAGGGATGACAAGCAGCAAATCAGAAGATCTTCACACTGTTGAGAAGGCTGATAAAACATTGGAGAATCTGGAGAAATGTGAGACTAATGTGCGGCAGATGGCTGAAAATGGTAGATTGCAGCCTCTTCTGACCCAGCTTCTTGAAGGTCCACCAGAAACCAAACTCATCATGGCTGGATACCTTGGTGAGCTGGTTGTAAACAATGATGTTAAAGTCATTGTTGCTGGAACTGTGGGTTCATCTCTGATCAATATAATGAAAAGTGGAAATATGCAATCAAGAGAAGCTGCACTGAGGGCACTAAATCAGATATCATCATGTGAGCCAAGTGCGAAGATTTTAATAGAGGCTGGAATACTTTCTCCTCTTGTCAATGACCTTTTTGCAGTGGGTCCTAATCTGCTTCCCACGCGATTAAAAGAGATCTCTGCTACAATTCTTGCCAATGTGGTAAACTCGGGAGAAGACTTTTATTCCATTCCATTTGGACCTGATCACCAAACTCTGGTCTCAGAGGATATAGTTCGTAATCTACTCCATCTTATAAGTAACACTGGTCCAGCAATAGAGTGCAAACTTCTCCAAGTTCTTGTTGGACTTACTACTTCCCCAACTACAGTTCTGAGTGTTGTGGCTGCTATCAAAAGCTCTGGTGCCACCATCAGTCTAGTTCAGTTCATTGAGGCACCACAGAAAGATCTACGTGTAGCTTCCATAAAACTTCTTCAGAATTTGTCTCCTCATATGGGTCAGGAACTAGCTGATGCACTACGCGGCTCTGTTGGACAGCTTGGTAGTCTAATTAAAGTCATAGCAGAAAATACAGGAATCACCGAAGAGCAAGCAGCGGCTGTTGGCCTTTTAGCTGATCTACCTGAAAGGGACTTGGGCCTCACAAGACAACTACTAGATGAAGGTGCCTTTGTGATGGTCATATCCAGGGTGATTGCCATCCGGCAGGGAGAGATAAGAGGCACTCGCTTCATGACACCATTTCTTGAAGGGCTTGTAAAGATTGTTGCAAGGGTTACATATGTCTTGGCTGAAGAGCCTGATGCCATTGCACTCTGCCGTGATCACAATCTTGCCGCGCTCTTTATTGATCTGCTTCAGTCCAATGGACTTGATAATGTACAAATGGTTTCTGCTACAGCTCTGGAGAATTTATCCCAAGAATCGAAAAATTTAACCAAATTGCCCGAGATGCCATTGCCTGGATTTTGTGGTTCAGTGTTTTCATGCTTCAGCAAACAGCCAGTCATAACTGGATTGTGTAGGCTCCACCGAGGGATGTGTTCTTTAAAAGAAACATTTTGTCTCTACGAAGGGCAGGCAGTGCTTAAGTTAGTAGGTCTACTGGACCACACAAATGTGAATGTGGTCGAGGCGGCACTTGCAGCTTTATCTACTTTAATAGATGATGGAGTAGATATTGAGCAAGGAGTGGCGATTTTGTGTGAAGCAGAGGGAGTGAAGCCTATACTTGATGTGCTACTTGAGAAAAGAACAGAAACTTTGAGGAGGAGGGCAGTTTGGGCAGTGGAGAGACTATTGAGAACAGATGATATAGCCTATGAAGTTTCTGGGGACCAAAATGTGAGTACTGCACTTGTGGATGCTTTCCAGCATGGTGACTATCGAACTAGGCAGACAGCTGAGCGTGCCCTCAAGCATGTTGATAAGATACCCAACTTCTCAGGAATCTTTCCAAACATGGGATGA 2445 0.4454 MMAASWDGSNDPGSQSDDSLHFERLHIEPLYDAFVCPLTKQVMRDPVTLENGQTFEREAIEKWFRECRESGRRLVCPLTLQELRSTELNPSMALRNTIEEWTTRNEAAQLDMARRSLNMGSPENETLQALKYVQHICRRSRSNKHMVRNTGLIPMIVDMLKSSSRKVRCRALETLRVVVEEDDENKELLAEGDTVRTIVKFLSHELSKEREEAVSLLYELSKSATLCEKIGSINGAILILVGMTSSKSEDLHTVEKADKTLENLEKCETNVRQMAENGRLQPLLTQLLEGPPETKLIMAGYLGELVVNNDVKVIVAGTVGSSLINIMKSGNMQSREAALRALNQISSCEPSAKILIEAGILSPLVNDLFAVGPNLLPTRLKEISATILANVVNSGEDFYSIPFGPDHQTLVSEDIVRNLLHLISNTGPAIECKLLQVLVGLTTSPTTVLSVVAAIKSSGATISLVQFIEAPQKDLRVASIKLLQNLSPHMGQELADALRGSVGQLGSLIKVIAENTGITEEQAAAVGLLADLPERDLGLTRQLLDEGAFVMVISRVIAIRQGEIRGTRFMTPFLEGLVKIVARVTYVLAEEPDAIALCRDHNLAALFIDLLQSNGLDNVQMVSATALENLSQESKNLTKLPEMPLPGFCGSVFSCFSKQPVITGLCRLHRGMCSLKETFCLYEGQAVLKLVGLLDHTNVNVVEAALAALSTLIDDGVDIEQGVAILCEAEGVKPILDVLLEKRTETLRRRAVWAVERLLRTDDIAYEVSGDQNVSTALVDAFQHGDYRTRQTAERALKHVDKIPNFSGIFPNMG 814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g4066 814 SUPERFAMILY RING/U-box 24 111 - -
Ssu1g4066 814 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 31 110 IPR013083 -
Ssu1g4066 814 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 2 812 - -
Ssu1g4066 814 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 43 2 812 - -
Ssu1g4066 814 ProSiteProfiles U-box domain profile. 29 108 IPR003613 GO:0004842|GO:0016567
Ssu1g4066 814 SUPERFAMILY ARM repeat 121 445 IPR016024 -
Ssu1g4066 814 SUPERFAMILY ARM repeat 459 800 IPR016024 -
Ssu1g4066 814 Gene3D - 111 312 IPR011989 -
Ssu1g4066 814 Gene3D - 574 804 IPR011989 -
Ssu1g4066 814 SMART arm_5 673 714 IPR000225 GO:0005515
Ssu1g4066 814 SMART arm_5 348 393 IPR000225 GO:0005515
Ssu1g4066 814 SMART arm_5 267 307 IPR000225 GO:0005515
Ssu1g4066 814 SMART arm_5 591 632 IPR000225 GO:0005515
Ssu1g4066 814 SMART arm_5 182 222 IPR000225 GO:0005515
Ssu1g4066 814 SMART arm_5 308 347 IPR000225 GO:0005515
Ssu1g4066 814 SMART arm_5 718 760 IPR000225 GO:0005515
Ssu1g4066 814 SMART arm_5 140 180 IPR000225 GO:0005515
Ssu1g4066 814 Coils Coil 257 277 - -
Ssu1g4066 814 SMART Ubox_2 33 101 IPR003613 GO:0004842|GO:0016567
Ssu1g4066 814 Pfam U-box domain 32 106 IPR003613 GO:0004842|GO:0016567
Ssu1g4066 814 Gene3D - 313 487 IPR011989 -
Ssu1g4066 814 CDD RING-Ubox_PUB 34 81 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g4066 Ssu-Chr1 99872099 99876177 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g4066 3 814 U-box Gene Family AT1G76390 65.848 0.0 1047
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g4066 - - gmx:100789746 1499.57