Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g4063 atggAGGCAGAGCATCATCACGAGACCTCAAACGGAATTGGAGGCTTGTACGTCAAAGTGATGACCGACGACCAAATGGAATTGCTGAGGCAGCAGATATCTGTCTATGCCACCATCTGCGAACAGCTTGTTGAGATGCACAAAGCCGTAACTACCCAACAGGACCTCGCAGGGCTGAGGCTGGGTAACTTGTACTGTGATCCGTTGATGGCGTGCTCTGGACACAAGATAACTGCGAGGCAGCGTTGGACTCCAACGCCTCTGCAGCTTCAAATACTTGAGCGTATTTTTGATGAGGGAAATGGCACTCCAAGCAAGCAGAAGATCAAGGATATAACCGTTGACCTGGGACAACATGGCCAAATATCAGAGACAAATGTTTATAACTGGTTCCAGAACAGAAGAGCTCGTTCAAAGCGGAAGCAACTCGCTCCCGCACCGAATGTTGTGGAGCCTGAAGCCGAGACAGAAGTTGAGTctccaaaagagaaaaagacaCGCGCAGAGAGCGTTCAAGTTCAACCCTATGAGAGTTCATCACCTCATAGGATCAAGGATATGTACATTCAGAGTCCCGACTTAGGATTTGACCAATTGATGGGTAAAATAGAAGTTGCAGGCTGCTACagttcttattttctttga 645 0.4558 MEAEHHHETSNGIGGLYVKVMTDDQMELLRQQISVYATICEQLVEMHKAVTTQQDLAGLRLGNLYCDPLMACSGHKITARQRWTPTPLQLQILERIFDEGNGTPSKQKIKDITVDLGQHGQISETNVYNWFQNRRARSKRKQLAPAPNVVEPEAETEVESPKEKKTRAESVQVQPYESSSPHRIKDMYIQSPDLGFDQLMGKIEVAGCYSSYFL 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g4063 214 PANTHER WUSCHEL-RELATED HOMEOBOX 13 1 214 IPR044559 GO:0003700
Ssu1g4063 214 SMART HOX_1 78 145 IPR001356 GO:0003677
Ssu1g4063 214 CDD homeodomain 80 142 IPR001356 GO:0003677
Ssu1g4063 214 ProSiteProfiles 'Homeobox' domain profile. 76 141 IPR001356 GO:0003677
Ssu1g4063 214 SUPERFAMILY Homeodomain-like 79 142 IPR009057 -
Ssu1g4063 214 Gene3D - 81 144 - -
Ssu1g4063 214 Pfam Homeodomain 80 140 IPR001356 GO:0003677
Ssu1g4063 214 MobiDBLite consensus disorder prediction 155 170 - -
Ssu1g4063 214 PANTHER TRANSCRIPTION FACTOR HOMOBOX-WOX FAMILY-RELATED 1 214 - -
Ssu1g4063 214 MobiDBLite consensus disorder prediction 139 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g4063 Ssu-Chr1 99834798 99836443 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g4063 16 212 Wox Gene Family AT4G35550 55.310 3.74e-75 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Ssu1g4063 Homeodomain 6.8e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g4063 - - var:108342525 396.356