Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g4061 ATGAAAGGAGGCAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAAACTCGCCGTGAATAAGAAGGGCGCTGCCACCAAGGCGAGGAAACCAACCGGAAAGGGGAAGGCAGCGAAAGACCCTAACAAGCCGAAGAGGCCTCCAAGTGCTTTCTTCGTTTTCATGGAGGAGTTCAGGAAGCAATTCAACAAGGAACATCCTGACAACAAAGCAGTGTCTGCTgTGGGCAAAGCTGCTGGAGCAAAATGGAAATCGATGTCTGATGCTGAGAAAGCGCCTTTTGTGGCAAAGTCTGAGAAACGAAAGGCAGATTATGAAAAGAGCATGAGAGCCTATAACAAGAAACAGGCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAATCAGTATCTGAGGTGAATGATGAGGATGATGACGAGGAAGGAAGTGGCGAGGTTTGCTTAAATACTTTGTCCATCATTGCTGTGTGGAGTTCGATCATTTttgtagtttatttattttgtgctatTTATTTTGTGCAGGAGGAGGATGACGATTAG 546 0.4505 MKGGKSKTESKRADAKLAVNKKGAATKARKPTGKGKAAKDPNKPKRPPSAFFVFMEEFRKQFNKEHPDNKAVSAVGKAAGAKWKSMSDAEKAPFVAKSEKRKADYEKSMRAYNKKQAEGPTGGDEEESEKSVSEVNDEDDDEEGSGEVCLNTLSIIAVWSSIIFVVYLFCAIYFVQEEDDD 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g4061 181 CDD HMGB-UBF_HMG-box 44 110 - -
Ssu1g4061 181 MobiDBLite consensus disorder prediction 63 145 - -
Ssu1g4061 181 MobiDBLite consensus disorder prediction 93 129 - -
Ssu1g4061 181 MobiDBLite consensus disorder prediction 130 145 - -
Ssu1g4061 181 Pfam HMG (high mobility group) box 44 113 IPR009071 -
Ssu1g4061 181 MobiDBLite consensus disorder prediction 1 18 - -
Ssu1g4061 181 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 1 149 IPR031061 -
Ssu1g4061 181 Coils Coil 95 115 - -
Ssu1g4061 181 MobiDBLite consensus disorder prediction 1 51 - -
Ssu1g4061 181 PANTHER HIGH MOBILITY GROUP B PROTEIN 2-RELATED 1 149 - -
Ssu1g4061 181 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 44 113 IPR009071 -
Ssu1g4061 181 SMART hmgende2 43 114 IPR009071 -
Ssu1g4061 181 Gene3D High mobility group box domain 27 122 IPR036910 -
Ssu1g4061 181 SUPERFAMILY HMG-box 32 118 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g4061 Ssu-Chr1 99779436 99780766 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Ssu1g4061 HMG_box 1.2e-23 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g4061 K25507 - gmx:100500173 247.284