Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g4056 ATGGGAAACTGTTTCGGAAAGGCAGATGATAACAAGATTAAGCACAGGACTACCACTGCCAATAATCCACGCACTTCTCCCCCAGAGAGATTGGTGAAGGAAACGGCGGAGGAGAGAGGCACGGTGGCACCAATTGGAGAGGCGGAGACGCCGAAACTTATAAAGTACACATTGGATGAGTTGAAAAGTGCCACGAGAAACTTCAGACCAGACACGGTCCTAGGCGAGGGTGGTTTTGGACGTGTTTTCAAAGGGTGGATTGATAAGAACACGTTCAAGCCCTCAAAAGTTGGCGTTGGAATCCCCGTTGCCGTGAAGAAGTCTAACCCTGATAGCCTCCAGGGTCTACAAGAATGGCAGAGTGAAGTACAATTTTTGGGAAAGTTCTGTCATCCAAACCTGGTTAAACTAATTGGCTACTGCTGGGAGGAAAATCAATTCCTGCTGGTATACGAATACATGCAAAAGGGCAGCCTTGAAAGTCACCTCTTCAGAAGAGGCCCGGAACCACTTTCGTGGGATATAAGGCTCAAGATAGCCATTGGAGCTGCCAAAGGTCTAGCTTTCTTGCACACATCAGAGAAGTCTGTCATCTATAGAGACTTCAAGACCTCTAACATTTTGCTTGATGGGgatTTTAATGCGAAGTTGTCAGACTTTGGGCTGGCAAAGTTTGGCCCCGTCAACGGTAGATCCCACGTAACCACACGGGTCATGGGCACCTATGGTTACGCAGCCCCTGAATACATGGCCACAGGCCATCTCTATGTTAAAAGCGATGTGTATGGATTCGGCGTTGTTCTGCTAGAAATGCTAACAGGCTTAGCAGCGCTGGACACAAATCGACCCACGGGTAAGCAGAATTTGGTGGAGTACGCTACGTCATCTCTAGGTGACAAAAAGAAGCTCAAAGGGATAATGGATTCAAGGATGGACGAACAATATTCATTAAGGGCTGCATTTCAAGTAGCCCAACTTATTCTAAAATGCTTAGAATCTGACCCAAAAAAACGACCCTCTATGGAGGATGTTTTGGGAACCTTAGAAAAAGCTCAAACCATAAAATACAAACCCAAAGGAAAGAAAGCCAGAGCGGTGTGTCAAACAAGTCAGCGACCAGAGGAGCATCCCCCAAATAACCAGCGTCGGTCACCACCGATTCATCACAACAACGGTAACCCCAAATCACGAACTCATTCTCGTCGACCCTAG 1212 0.4703 MGNCFGKADDNKIKHRTTTANNPRTSPPERLVKETAEERGTVAPIGEAETPKLIKYTLDELKSATRNFRPDTVLGEGGFGRVFKGWIDKNTFKPSKVGVGIPVAVKKSNPDSLQGLQEWQSEVQFLGKFCHPNLVKLIGYCWEENQFLLVYEYMQKGSLESHLFRRGPEPLSWDIRLKIAIGAAKGLAFLHTSEKSVIYRDFKTSNILLDGDFNAKLSDFGLAKFGPVNGRSHVTTRVMGTYGYAAPEYMATGHLYVKSDVYGFGVVLLEMLTGLAALDTNRPTGKQNLVEYATSSLGDKKKLKGIMDSRMDEQYSLRAAFQVAQLILKCLESDPKKRPSMEDVLGTLEKAQTIKYKPKGKKARAVCQTSQRPEEHPPNNQRRSPPIHHNNGNPKSRTHSRRP 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g4056 403 SUPERFAMILY Protein kinase-like (PK-like) 52 349 IPR011009 -
Ssu1g4056 403 CDD STKc_IRAK 74 350 - -
Ssu1g4056 403 ProSiteProfiles Protein kinase domain profile. 68 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g4056 403 ProSitePatterns Serine/Threonine protein kinases active-site signature. 197 209 IPR008271 GO:0004672|GO:0006468
Ssu1g4056 403 Gene3D Transferase(Phosphotransferase) domain 1 154 371 - -
Ssu1g4056 403 Gene3D Phosphorylase Kinase; domain 1 53 153 - -
Ssu1g4056 403 PANTHER SERINE/THREONINE-PROTEIN KINASE CX32, CHLOROPLASTIC-RELATED 36 371 - -
Ssu1g4056 403 ProSitePatterns Protein kinases ATP-binding region signature. 74 107 IPR017441 GO:0005524
Ssu1g4056 403 Pfam Protein tyrosine and serine/threonine kinase 72 346 IPR001245 GO:0004672|GO:0006468
Ssu1g4056 403 MobiDBLite consensus disorder prediction 350 403 - -
Ssu1g4056 403 MobiDBLite consensus disorder prediction 1 39 - -
Ssu1g4056 403 PANTHER OS01G0588500 PROTEIN-RELATED 36 371 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g4056 Ssu-Chr1 99677214 99682820 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g4056 56 348 Glycoside Hydrolase AT3G07070 48.986 6.10e-93 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Ssu1g4056 PK_Tyr_Ser-Thr 8.9e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g4056 - - aprc:113865973 635.18