Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g4054 ATGATGGGAGATGGTGGTGTGACATCATCTGCTACTACCATGATGGTagctccaccaccaccaccaccaccacctgaTGGAACTACTTCAATGGAGTTTGACTTCATGGGTGACCTTTTCTTAGATGGGTGCTGGTTGGAAGCCTCTGCTGATGGATCTGACTTCTTGCTGCAAAGTCCTTCCTTTTCCAATCCCCTCTTTGACCCTTCATTCTCCTGGCCGGCCTTGGAGACCAACCACAATGAATCCCAGGATGCTGCTTTTGAGACTCAACAAGAAAACCAGGACATGGttaatgttgttgttgctggtggtggtagtagtagTAGTTGTAGTCAGCAGTTTCAGTCTGAGACTCATTTAGTTGAAGGTACATCTGAAGTGGTCAGAAGGTGGTGGTTTGCACCCACACCTAGTCCTGGACCTGGGCCTTCCATAATGGAGAAGCTGGTAAGGGCCCTCATGTGGATCAAAGATTACAATAGGAACAAAGATATGCTCATACAGACATGGGTGCCGGTTCATAGAGGGGGTAGGTCGATTCTGGCTGCTGATGATCTTCCATTCTCGCTTGAATCTGGGTCTGTGAACCTTGCAAAGTACCGAGAAATCTCGGTGACATATCAGTTTTCAGCAGAGGAGGGTGACTCCAAGGAGTTGGTGCGGGGTTTGCCTGGTCGAGTGTTTAGGTACAAGGTTCCTGAGTGGACTCCTGATGTTAGGTTCTTTAGGAGTGATGAGTACCCGCGAGTTGACCATGCTCAAGAGTATGATGTAAGTGGAACGTTGGCAGTTCCAGTCTTTGAGCAAGGAAGCAAGATGTGCTTGGGGGTTGTTGAGGTTGTGATGACTACTCAGCAGATCAACTATGGCCCTGAACTTGAGAGTGTTTGCAAAGCACTTGAGGCTGTTGATCTTAGAAGCTCGAAACATTCAAGTATTCAGAATGTGAAGgCATGTAACAGGTCCTACGAAGCTGCACTACCCGAGATTCAAGAGGTGTTGAGATCTGCATGTGAAATGTACAAATTACCTTTAGCTCAAACTTGGTTCCCCTGTGTCCAACAAGGCAAAGAGGGGTGTCGGCACTCTGAAGATAATTATCTACTCTGTATATCTCCCGTGGAGCAGGCTTGCTATGTTGGTGATCCCTCTATCAGGTCTTTTCATGAGGCTTGCACTGAGCATCACTTGTTAAAAGGTGAAGGTGTTGCTGGGAGAGCTTTTATGACAAACCAACCATGCTTCTCAGCTGACATAACTTCTTTAAGCAAGAAAGAGTATCCACTGTCTCATCATGCGAGGTTGTTTGGATTGCGGGCTGCTGCTGCCATACGCCTTCGAAGCATCTATAATAGTACAGATGACTTTGTTCTAGAGTTCTTCTTGCCTGTAGATTGCAATGACAGTAAACAACAGAGAAAGATGCTTACTTCATTGTCCATCATTATACAAAGGGTTTGCGACAGCTTGCGGGTTATAACAGATGAGGAATTGGAGGAAGCTAACTTGTCAGTTGATGAAGTGATGGCCCTTGCAGATAATGGATTTGCTAGGACTGCAATTTGTACGGAACTCCAATACAAAGGGATTGTTGCCTCATTGGATACTGAAGAAAAATCAAGTGAAACAATGGGTAGAAAATCCTCTGACCTAAGGCAGCAACAAGAAAGTCCTATTTTAAAAGGAAACCTTGACTGTGTTAGGGAGTGTTCTACTTCTGCTGAGGGTAACTTATCAAGTGCAGGAATAAGTAAAACGGGAGAGAGAAGACGGGCCAAAGCAGAGAAAACTATCACTCTGCAAGTTCTCAGACAATATTTTGCTGGAAGCCTAAAAGATGCTGCCAAGAATATTGGTGTTTGTACTACAACTTTGAAAAGGATCTGCCGGCAACATGGGATAAAGCGTTGGCCTTCTCGAAAGATCAAAAAGGTTGGTCACTCCTTACAGAAACTTCAACTTGTCATTGACTCAGTTCAAGGTGCCTCTGGTGCATTTCAAATAGATTCCTTCTACTCAAAATTCTCGGATCTAGCTTCTCCAAATTTATCTGGAACTGGCTTCTTCTCAACTTTGAATCAAAGTGACAATCCAAACTCAATAAGCACGCAGGCAGATCCTGGCTCATTGAGCCCAGAAGGTGGATCAAAATCACCCTCTTCGTCATATGGTCAGAGTTCCATTTCAAGCCATTCCTGCTCCAGCATGTCAGAGCTACAGCATCACGCAACCAACGTTGCCGGTAACAAAGATCCTGCAGTTGGTGAAGGTTCTTCTGCTGTTGTGTTGAAGAGGATCAGAAGTGAAGCTGAGCTTAAAAGCTTGTGTCAAGATAGAGCAAAGCTCTTGCCAAGATCCCAAAGCCAGGAAACACTTGGTGAACACCCTAAAGCTCAGTATCAGCGGCCCTTACCGAAAACCAGTAGCAAGGTGGATGCTCACAGAGCAAAAGTCACATATGGAGACGAGAAAACCCGGTTTCGGATGCCGAAGAATTGGGGCTATGAAGATCTTTTGCAGGAAATTGCTATCAGATTTAATGTGAGTGACATGAGCAAATTCGATGTCAAGTACTTGGATGATGACTGTGAGTGGGTACTACTTACTTGTGATGCTGATTTAGAGGAGTGCATTGATGTTTGTCAATCTTCTGAGAGTGGTACCATCAAACTTTGTCTACAAGCTTCTAGTCATAGTATGAGAAGTACTTTAGAATTTAGATAA 2727 0.4353 MMGDGGVTSSATTMMVAPPPPPPPPDGTTSMEFDFMGDLFLDGCWLEASADGSDFLLQSPSFSNPLFDPSFSWPALETNHNESQDAAFETQQENQDMVNVVVAGGGSSSSCSQQFQSETHLVEGTSEVVRRWWFAPTPSPGPGPSIMEKLVRALMWIKDYNRNKDMLIQTWVPVHRGGRSILAADDLPFSLESGSVNLAKYREISVTYQFSAEEGDSKELVRGLPGRVFRYKVPEWTPDVRFFRSDEYPRVDHAQEYDVSGTLAVPVFEQGSKMCLGVVEVVMTTQQINYGPELESVCKALEAVDLRSSKHSSIQNVKACNRSYEAALPEIQEVLRSACEMYKLPLAQTWFPCVQQGKEGCRHSEDNYLLCISPVEQACYVGDPSIRSFHEACTEHHLLKGEGVAGRAFMTNQPCFSADITSLSKKEYPLSHHARLFGLRAAAAIRLRSIYNSTDDFVLEFFLPVDCNDSKQQRKMLTSLSIIIQRVCDSLRVITDEELEEANLSVDEVMALADNGFARTAICTELQYKGIVASLDTEEKSSETMGRKSSDLRQQQESPILKGNLDCVRECSTSAEGNLSSAGISKTGERRRAKAEKTITLQVLRQYFAGSLKDAAKNIGVCTTTLKRICRQHGIKRWPSRKIKKVGHSLQKLQLVIDSVQGASGAFQIDSFYSKFSDLASPNLSGTGFFSTLNQSDNPNSISTQADPGSLSPEGGSKSPSSSYGQSSISSHSCSSMSELQHHATNVAGNKDPAVGEGSSAVVLKRIRSEAELKSLCQDRAKLLPRSQSQETLGEHPKAQYQRPLPKTSSKVDAHRAKVTYGDEKTRFRMPKNWGYEDLLQEIAIRFNVSDMSKFDVKYLDDDCEWVLLTCDADLEECIDVCQSSESGTIKLCLQASSHSMRSTLEFR 908
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g4054 908 ProSiteProfiles PB1 domain profile. 814 897 IPR000270 GO:0005515
Ssu1g4054 908 SUPERFAMILY CAD & PB1 domains 813 899 - -
Ssu1g4054 908 SMART PB1_new 814 897 IPR000270 GO:0005515
Ssu1g4054 908 CDD PB1_NLP 815 896 IPR034891 -
Ssu1g4054 908 Gene3D - 816 897 - -
Ssu1g4054 908 PANTHER PROTEIN NLP4 28 901 - -
Ssu1g4054 908 Pfam PB1 domain 815 896 IPR000270 GO:0005515
Ssu1g4054 908 Pfam RWP-RK domain 598 646 IPR003035 -
Ssu1g4054 908 MobiDBLite consensus disorder prediction 691 738 - -
Ssu1g4054 908 ProSiteProfiles RWP-RK domain profile. 585 666 IPR003035 -
Ssu1g4054 908 MobiDBLite consensus disorder prediction 1 27 - -
Ssu1g4054 908 MobiDBLite consensus disorder prediction 785 813 - -
Ssu1g4054 908 PANTHER PROTEIN NLP8 28 901 IPR045012 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g4054 Ssu-Chr1 99617405 99621260 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g4054 31 899 NLP Transcription Factor Family AT1G20640 49.544 0.0 739
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Ssu1g4054 PB1 6.4e-18 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g4054 - - gmx:100790922 1473.37