Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g4026 ATGCCGCTCAAGTTGGCGGGAGGAGCCCCTGTCGGCGCCCTTCTCCTATGCGTTgctatttctctctttcacaTTGCTGGGGCCGAAGATCCCTACAGGTTCTTCAACTGGAATGTTACTTATGGGGACATTTTTCCTCTTGGTGTTCGCCAAAGGGGAATATTAATCAACGGGCAATTCCCAGGTCCAGACATTCATTCTGTTACCAACGACAACCTCATCATCAATGTCTTCAACAGCTTGGATGAGCCCTTTCTCCTCTCCTGGAATGGGATCCAGCAGAGAAGGAACTCATTTGAAGATGGTGTTTTTGGAACAACATGCCCCATCCCACCAGGGAGGAACTTCACTTACATACTTCAAGTGAAGGATCAAATTGGGAGCTTTTACTACTTTCCATCTCTTGCATTTCACAAAGCCGCTGGCGGTTTTGGAGGCATTAGGATCCTAAGCAGGCCAAGAATTCCAGTCCCCTTCCTTGATCCCGCTGGCGATTACACTGTTCTCATTGGAGATTGGTACAAGTCCAACCACACgACTTTGAAAGCCCATCTTGATAGGGGCAAGAAGCTGCCTTTTCCTGATGGAGTCCTTATCAATGGTCGCGGACCAAATGGAGTGTCTTTCAACGTAGAACAAGGAAAGACTTATAGGCTTAGAATATCAAACGTGGGGCTGCAACATTCCCTTAACTTTCGCATCCAGAACCATAAAATGAAGCTGGTAGAAGTAGAAGGAACGCACACCCTCCAAATTTCGTACTCGTCTATCGACGTTCATGTAGGTCAATCTATTTCAGTGCTGGTAACTGCCGATCAACCTGCTCAGGACTATTACATCGTGGTTTCCACACGATTCTCCTATAAGGTCCTCACCACCACTGGAGTACTTCGCTATAGCAACTCCGCAGGCCCAGTGTCAGGCCCACCCCCTGGTGGACCTACAATCCAAATTGATTGGTCTCTGAATCAGGCCCGCTCAATTAGGACTAACCTTACAGCAAGTGGACCGAGGCCAAACCCGCAAGGATCCTACCACTACGGTCTCATAAACACGACCAAGACCATCATACTGGCGAGTTCCGCTGGTCAAGTAAATGGGAAGCAAAGATACGCAATTAACAGCGTGTCTTATGTTACCCCGGACACCCCTCTTAAGCTTGCCGATTACTTCAAAATCTCGGGTGTTTTCCGCCCGGGAAGCATATCTGACAGACCCACTGGTGGTGGCATTTACCTTGACACATCTGTCTTACAAGCTGACTATAGATCTTTTGTCGAGATTGTTTTCCAAAACAACGAGAACATTGTTCAGAGCTATCATCTTGATGGCTACTCTTTCTTTGTCGTTGGTATGGATGGGGGACAGTGGACGCCTGCTAGCAGGAACCAGTACAATCTCCGAGATGCAGTTTCACGTTGCACCACACAGGTATATCCCATGTCATGGACTGCTATTTATGTTGCACTTGACAATGTGGGAATGTGGAACTTGAGGTCTGAGTTTTGGGCACGACAATACCTTGGCCAACAGTTATATTTGCGCGTTTATACGGCATCAACCTCAATCAGAGACGAGTTTCCTGTTCCAAAGAATGCAATTCTCTGTGGTAGGGCAAGTGGGAGACACACGCGACCCCTTTGA 1644 0.4726 MPLKLAGGAPVGALLLCVAISLFHIAGAEDPYRFFNWNVTYGDIFPLGVRQRGILINGQFPGPDIHSVTNDNLIINVFNSLDEPFLLSWNGIQQRRNSFEDGVFGTTCPIPPGRNFTYILQVKDQIGSFYYFPSLAFHKAAGGFGGIRILSRPRIPVPFLDPAGDYTVLIGDWYKSNHTTLKAHLDRGKKLPFPDGVLINGRGPNGVSFNVEQGKTYRLRISNVGLQHSLNFRIQNHKMKLVEVEGTHTLQISYSSIDVHVGQSISVLVTADQPAQDYYIVVSTRFSYKVLTTTGVLRYSNSAGPVSGPPPGGPTIQIDWSLNQARSIRTNLTASGPRPNPQGSYHYGLINTTKTIILASSAGQVNGKQRYAINSVSYVTPDTPLKLADYFKISGVFRPGSISDRPTGGGIYLDTSVLQADYRSFVEIVFQNNENIVQSYHLDGYSFFVVGMDGGQWTPASRNQYNLRDAVSRCTTQVYPMSWTAIYVALDNVGMWNLRSEFWARQYLGQQLYLRVYTASTSIRDEFPVPKNAILCGRASGRHTRPL 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g4026 547 Pfam Multicopper oxidase 165 301 IPR001117 -
Ssu1g4026 547 Gene3D - 32 153 IPR008972 -
Ssu1g4026 547 PANTHER MULTI-COPPER OXIDASE 11 540 IPR045087 -
Ssu1g4026 547 SUPERFAMILY Cupredoxins 349 538 IPR008972 -
Ssu1g4026 547 SUPERFAMILY Cupredoxins 28 179 IPR008972 -
Ssu1g4026 547 Pfam Multicopper oxidase 39 152 IPR011707 GO:0005507
Ssu1g4026 547 Pfam Multicopper oxidase 383 519 IPR011706 GO:0005507|GO:0016491
Ssu1g4026 547 CDD CuRO_3_AAO_like_1 380 501 IPR034275 GO:0005507
Ssu1g4026 547 PANTHER MULTI-COPPER OXIDASE-LIKE PROTEIN 11 540 - -
Ssu1g4026 547 SUPERFAMILY Cupredoxins 159 339 IPR008972 -
Ssu1g4026 547 Gene3D - 163 338 IPR008972 -
Ssu1g4026 547 Gene3D - 348 543 IPR008972 -
Ssu1g4026 547 CDD CuRO_1_AAO_like_1 34 149 IPR034273 GO:0005507
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g4026 Ssu-Chr1 99280719 99289813 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g4026 - - gmx:100815570 1067.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0022 5 314037 322320 Ssu1g4026 1 99280719 99289813 PCT