Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g4024 ATGGGTTCGCTTTGTGCCCTAGACGAACCTCTGCAATATCCTCCTGCTCGCAGAGACTACTCAGTCGTCGATGAATACCATGGCGTCAAGATTCCCGACCCTTATCGATGGCTCGAAGATCCTGATGCGGAAGAAGTGAAAGAGTTCGTAGGGAAACAGGTTCAGCTGACGGATTCGGTTCTTCAAAAATGCGAAACTAGAGGGAAGCTTAGGGAAAATATAACGAAGCTATTTGACCATCCTCGTTACGATGCTCCGTTTAGGCGAACCAATAAATACTTTTACTTCCACAACACTGGGCTTCAGCCACAAAACATCCTATATGTGCAGGAGAGTTTGGAGGGAGAGGCAGAGGTTTTACTCGATCCTAATGCCTTGAGTGAAGACGGAACCGTTTCGCTGAGCACACTGTCGGTGAGCGAAGATGCCAAGTACTTGGCTTATGCGCTTAGTTCAAGCGGTAGCGATTGGACGACTATAAAAGTAATGCGGATTGAGGACAGGAATGTTGAGCCTGATACTTTATCGTGGCATGATAGTAAAGGTTTCTTTTATAGCCGCTATCCAGCACCCAAAGATGGAGAAGCAGTAGATGCTGGGACTGAAACAAATGCTAACCTTCATCATCAGCTCTATTATCATTTTCTGGGTACAGATCAATCAGAAGATGTTTTGTGCTGGAGAGATCCTCAAAACCCTAAATATACATTTGGAGGAAGTGTTACTGATGATGGCAAGTACATCCATCTCCATATTGCAGAAGGGTGTGATCCAGTTAACAAACTTTACTACTGTGACTTGTCCAAACTTCCTAATGCGCTGGAAGGCTTTCAGAATGGAAATTCCCTCCTCCCGTTTGTCAAACTTATTGATAACTTTGACGCACAGTATGAAGTCATTGCAAATGATGACACCGTGTTtacatttttaactaataaagatgctccaaaatataaaatagtccGAGTAGATTTGAAAGAACCAACTGCTTGGGCTGATGTTCTCCAAGAGTCTGAAAAAGATGTACTTGAGTCAGCATGTGCTGTAAATGGTAACCAACTGATAGTGAGTTACTTGAGTGATGTGAAGTATCTTCTACAAGTTAGAGACTTAAAAACAGGTTCCTTGCTGCATCAATTACCAATTGACATTGGCTCAGTGTCTGAAATTTCTGCTCGGCGTGAAGATAGTGTGGTTTTCATCAGCTTTACAAGCTTTTTAACTCCCGGTATCATCTACCAGTGCAACCTGGGAACAGAGATTCCTGTAATGAAGATATTTCGTGAAATTGTTGTCCCTGGGTTTGATCGGTCTGAATTTCATGTTAAACAGGATTTTGTGACTAGTAAAGATGGTACCAAGATCCCAATGTTCATTGTTGCCAAAAGGGATATTATTTTGGATGGTTCACACCCATGTTTGTTGTATGGATATGGTGGTTTTAACATCAGTATTACACCATATTTCAGTGTCAGTCGCATTGTACTCACAAGACATTTAGGTGTTGTTTTCTGCATAGCAAATATTCGTGGTGGTGGAGAATATGGGGAGGAATGGCATAAAGCAGGTTCCCTTGAAAGAAAACAGAATTGCTTTGATGACTTCATTTCTGCTGCTGAATACCTTGTATCTACTGGTTATACTCAACCCAGAAAGTTATGCATTGAAGGTGGAAGCAATGGTGGACTTCTTGTTGGTGCTTGTATAAATCAGAGACCTGATTTATTTGGCTGCGCGCTGGCTCATGTTGGTGTTATGGACATGCTACGGTTCCACAAATTTACCATAGGTCATGCTTGGACCTCAGATTATGGTTGTTCAGACAAGGAGGAAGAGTTTCATTGGCTAATCAAATACTCACCACTACATAATGTGCGGAGACCGTGGGAACAGCATCCTGATCAGTCATTTCAGTATCCATCAACCATGCTGTTGACAGCTGATCATGATGACCGTGTTGTGCCACTGCACACATTGAAGCTATTGGCGACCATGCAGTATGTCCTTTGTATGAGCTTGGAAAAAAGTCCCCAGACAAACCCTGTAATTGGACGCATTGACTGCAAGGCTGGACATGGAGCTGGTCGTCCAACACAGAAAATGATCGAGGAGGCTGCTGACCGGTACAGTTTTATGGCTAAAATGTTAGAAGTGCATTGGATTGAATAG 2169 0.4219 MGSLCALDEPLQYPPARRDYSVVDEYHGVKIPDPYRWLEDPDAEEVKEFVGKQVQLTDSVLQKCETRGKLRENITKLFDHPRYDAPFRRTNKYFYFHNTGLQPQNILYVQESLEGEAEVLLDPNALSEDGTVSLSTLSVSEDAKYLAYALSSSGSDWTTIKVMRIEDRNVEPDTLSWHDSKGFFYSRYPAPKDGEAVDAGTETNANLHHQLYYHFLGTDQSEDVLCWRDPQNPKYTFGGSVTDDGKYIHLHIAEGCDPVNKLYYCDLSKLPNALEGFQNGNSLLPFVKLIDNFDAQYEVIANDDTVFTFLTNKDAPKYKIVRVDLKEPTAWADVLQESEKDVLESACAVNGNQLIVSYLSDVKYLLQVRDLKTGSLLHQLPIDIGSVSEISARREDSVVFISFTSFLTPGIIYQCNLGTEIPVMKIFREIVVPGFDRSEFHVKQDFVTSKDGTKIPMFIVAKRDIILDGSHPCLLYGYGGFNISITPYFSVSRIVLTRHLGVVFCIANIRGGGEYGEEWHKAGSLERKQNCFDDFISAAEYLVSTGYTQPRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRFHKFTIGHAWTSDYGCSDKEEEFHWLIKYSPLHNVRRPWEQHPDQSFQYPSTMLLTADHDDRVVPLHTLKLLATMQYVLCMSLEKSPQTNPVIGRIDCKAGHGAGRPTQKMIEEAADRYSFMAKMLEVHWIE 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g4024 722 Gene3D - 81 431 - -
Ssu1g4024 722 ProSitePatterns Prolyl endopeptidase family serine active site. 534 564 IPR002471 GO:0004252|GO:0006508
Ssu1g4024 722 SUPERFAMILY Peptidase/esterase 'gauge' domain 10 419 - -
Ssu1g4024 722 PANTHER PROLYL OLIGOPEPTIDASE-LIKE PROTEIN 1 722 - -
Ssu1g4024 722 Pfam Prolyl oligopeptidase family 487 717 IPR001375 GO:0006508|GO:0008236
Ssu1g4024 722 PANTHER PROLYL ENDOPEPTIDASE 1 722 - -
Ssu1g4024 722 Gene3D alpha/beta hydrolase 22 712 IPR029058 -
Ssu1g4024 722 Pfam Prolyl oligopeptidase, N-terminal beta-propeller domain 14 420 IPR023302 GO:0004252
Ssu1g4024 722 PRINTS Prolyl oligopeptidase serine protease (S9A) signature 499 523 IPR002470 GO:0004252|GO:0006508
Ssu1g4024 722 PRINTS Prolyl oligopeptidase serine protease (S9A) signature 639 661 IPR002470 GO:0004252|GO:0006508
Ssu1g4024 722 PRINTS Prolyl oligopeptidase serine protease (S9A) signature 472 490 IPR002470 GO:0004252|GO:0006508
Ssu1g4024 722 PRINTS Prolyl oligopeptidase serine protease (S9A) signature 527 546 IPR002470 GO:0004252|GO:0006508
Ssu1g4024 722 PRINTS Prolyl oligopeptidase serine protease (S9A) signature 557 577 IPR002470 GO:0004252|GO:0006508
Ssu1g4024 722 SUPERFAMILY alpha/beta-Hydrolases 442 667 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g4024 Ssu-Chr1 99255220 99261563 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g4024 501 604 Carbohydrate Esterase AT5G36210 32.692 8.08e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g4024 K01322 - gmx:100776544 1400.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0024 5 331960 336670 Ssu1g4024 1 99255220 99261563 PCT