Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g4022 ATGTCATCGGCGGCGAGAACCCCGGCCTCCGCCGGCGAGGACGGGAAGCACTACCCTGCTCCACTCGCCCCTCACGAGGACGTCGTGAAGGACTCCACTCTCTTCTGGGACACTCTCAGGCGCTTTCACTTTGTTATGGGTACCAAATTCATGATTCCTGTGATTGGAGGGAAGGAGCTGGACTTGCACGTTCTTTACGTGGAAGTTACTAGAAGAAGTGGCTACGAGAAGGTGGTTGCGGAGAAGAAATGGAGGGAAGTTGGTAGTGTTTTCAAGTTCTCAGCTACCACCACAAGCGCTTCTTTTGTGCTGAGGAAGCATTACCTCAGTCTTCTTTATCATTATGAGCAAGTTCACTTCTTTAAAGCTCGGGGTCCTATCTACACTCCATCAGTTGATGCATTTTCTGGCAACAGCCCTTCGTGGAGACCCGAATTAGCTATTGTGGAATATTCGCCTAAGCCCATAAATAATACTCCTGAATCCCGTGCTGAAGATGCTTCATACCTTTTAGGAAATGGAACGATCGAGGGGAAATTTGACTGTGGTTATTTAGTGTCGGTGAAACTGGGTTCGGAAGTTCTTAGAGGGGTGCTTTACCATCCAGAGCAATTGGTTCCTCCTCCATCGGTTCCTCAACATGAGAGTGCCATAGTACCATTCAATCGCAAACATCACCATTCTGGTCGCAGgaggaaaaacaaaagaaggtgGGACCCCAACTATCCAAAGCCGAATAGGAGTGGCTATAACTTCTTCTTTGCTGAAAAGCATTACACTCTCAAAACTCTCTACCCAAACAGAGAAAGGGAGTTTACCAAAATGATTGGCCAGTCATGGAACAGTCTTAGCCCTGAAGAGAgaatgGTTTATCAGAACATTGGCTtaagagacaaagaaaggtacaaGAGAGAATTGACGGAATACAAAGAGAAGATGAAGCTTAGGCAGACCCCAGAAGTTGGACGTCCATAG 975 0.4523 MSSAARTPASAGEDGKHYPAPLAPHEDVVKDSTLFWDTLRRFHFVMGTKFMIPVIGGKELDLHVLYVEVTRRSGYEKVVAEKKWREVGSVFKFSATTTSASFVLRKHYLSLLYHYEQVHFFKARGPIYTPSVDAFSGNSPSWRPELAIVEYSPKPINNTPESRAEDASYLLGNGTIEGKFDCGYLVSVKLGSEVLRGVLYHPEQLVPPPSVPQHESAIVPFNRKHHHSGRRRKNKRRWDPNYPKPNRSGYNFFFAEKHYTLKTLYPNREREFTKMIGQSWNSLSPEERMVYQNIGLRDKERYKRELTEYKEKMKLRQTPEVGRP 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g4022 324 CDD ARID_HMGB9-like 31 116 IPR045303 GO:0003677
Ssu1g4022 324 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 12 318 - -
Ssu1g4022 324 MobiDBLite consensus disorder prediction 223 238 - -
Ssu1g4022 324 Pfam ARID/BRIGHT DNA binding domain 34 116 IPR001606 GO:0003677
Ssu1g4022 324 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 12 318 - -
Ssu1g4022 324 SMART bright_3 30 121 IPR001606 GO:0003677
Ssu1g4022 324 MobiDBLite consensus disorder prediction 219 243 - -
Ssu1g4022 324 ProSiteProfiles ARID domain profile. 29 120 IPR001606 GO:0003677
Ssu1g4022 324 SUPERFAMILY HMG-box 240 313 IPR036910 -
Ssu1g4022 324 MobiDBLite consensus disorder prediction 1 23 - -
Ssu1g4022 324 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 243 310 IPR009071 -
Ssu1g4022 324 Gene3D High mobility group box domain 227 321 IPR036910 -
Ssu1g4022 324 SMART ARID_2 26 116 - -
Ssu1g4022 324 SMART hmgende2 242 311 IPR009071 -
Ssu1g4022 324 CDD HMGB-UBF_HMG-box 243 306 - -
Ssu1g4022 324 Gene3D - 23 125 IPR036431 GO:0003677
Ssu1g4022 324 SUPERFAMILY ARID-like 26 129 IPR036431 GO:0003677
Ssu1g4022 324 Pfam HMG (high mobility group) box 243 310 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g4022 Ssu-Chr1 99200867 99203228 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g4022 16 317 ARID Transcription Factor Family AT1G76110 67.314 1.56e-137 391
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Ssu1g4022 ARID 7.9e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g4022 - - gmx:100784746 628.632