Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g4021 atgggAGATACAGAGAGTTGCAGTAGCGGAATTTTCAAGTCTGGATGGAATCCAAGTCGAAGACAGAGGCAGAAGGTTGGAGTTTACAACGAGGTTCTATGTAAACTTAAAGAATTGAATGTTCCAGAGGCTGTGGTTCCTGGTTTTGAGGACGAGCTTTGGGCGCACTTCTATCGCCTTCCCGCTAGGTATGCGTTGGACATGAATGTGGAGAGGGCCCAAGATGTTCTTATGCATAAAAGGTTACTGGACACCGCACGAGCCCCAACTAGAGCAACCGGACCTGCAGTCGAAGTCCATCTTGTACAGGTTCGTTCTGCTTCTGCTGGTCGTTCTAGTAAATCCCTTCATTCATACTCACAAAGTGAAGTTTGTCCTCAAGATTCTGGTATTCCAGGCAACATGAGCTTCCATCCTCCCCCGGCCTTTGGTTCGTCAGCTAACGTGGAACTTGCTCTGTGTAAGAGCCAGTTACAAGTCCGAGACAAGGATaactatttgaatttttatgcaCACTATGCCCGGCCTATGCATGAAATCACAATTTCAACAAATGACAAGCCAAAACTTCTCTGTCAGTTGACTTCCTTACTGTCTGAGACTGGGCTGGACATTCAAGAAGCACATGCTTTTTCGACAATAGATGGCTATTCATTGGatgtttttgttgttggtgGTTGGGCAGTTGAgGAGACGGAGAAGTTAAAACATGAACTAGCTAAGAAAATTCAGAAACTCCAGCAacttcaattgaaagaaaatgggAGTCTTCCTACTGCAAAGCAAGAGCAAACGGGGATGAACTTTATGTGGAGAATTGGCGCTGGATGTTTGagatataaagagaaaattgcATCTGGACCTTTCAGTGATTTGTATAAAGGTACGTTCTGTAATCAAGATGTAGCTATCAAAGTCCTTAAACATGagaatttgaatgaaaatatacaaaaagAGTTTGCTCAGGAAGTGTATATCCTAAGTAAAATTCAACACAAGAATGTTGTCAAATTTGTTGGCGCTTGTACAAAACCCCCAAACCTATATCTTGTCACAGAATACATGTCTGGTGGAAGTATGTTCGACTTTTTGCATAAACAGAAGACCGTCCTTACTCTTCCATCTTTACTCAAAGTAGCCATTGATGTTTCCGAAGGAATGAAATATTTGCATCAGAATGATATTATACATCGGGACCTTAAAGCAGCTAATCTTTTGATAGATGAGAATGGGGTAGTAAAGGTTGCGGATTTTGGTGTAGCTAGAGTGCACGATCAGTCTGGTATCATGACTGCAGAAACTGGAACTTATCGGTGGATGGCTCCAGAGGTTATTGAACATAAACCATATGATCACAAAGCCGATGTCTTTAGCTTTGCCATTGTCCTTTGGGAGCTGCTCACAGGAAAGCTTCCTTATGAGCATTTGTCCCCAATGCAAGCAGCAGTTGGAGTGATCCAGAAGGGGTTAAGGCCAAAAATTCCATGGCATACTCATCCAAAGTTAGTGGAATTGCTTCACTGGTGCTGGCACCAAGATCCATCTTTGAGACCCAAGTTCTCAGAAGTTCTGGAATTTCTGCTGCATGTGACCAAGACGGTATGTCGAGGGGAGTCTTGA 1620 0.4093 MGDTESCSSGIFKSGWNPSRRQRQKVGVYNEVLCKLKELNVPEAVVPGFEDELWAHFYRLPARYALDMNVERAQDVLMHKRLLDTARAPTRATGPAVEVHLVQVRSASAGRSSKSLHSYSQSEVCPQDSGIPGNMSFHPPPAFGSSANVELALCKSQLQVRDKDNYLNFYAHYARPMHEITISTNDKPKLLCQLTSLLSETGLDIQEAHAFSTIDGYSLDVFVVGGWAVEETEKLKHELAKKIQKLQQLQLKENGSLPTAKQEQTGMNFMWRIGAGCLRYKEKIASGPFSDLYKGTFCNQDVAIKVLKHENLNENIQKEFAQEVYILSKIQHKNVVKFVGACTKPPNLYLVTEYMSGGSMFDFLHKQKTVLTLPSLLKVAIDVSEGMKYLHQNDIIHRDLKAANLLIDENGVVKVADFGVARVHDQSGIMTAETGTYRWMAPEVIEHKPYDHKADVFSFAIVLWELLTGKLPYEHLSPMQAAVGVIQKGLRPKIPWHTHPKLVELLHWCWHQDPSLRPKFSEVLEFLLHVTKTVCRGES 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g4021 539 Pfam Protein tyrosine and serine/threonine kinase 279 527 IPR001245 GO:0004672|GO:0006468
Ssu1g4021 539 Coils Coil 229 252 - -
Ssu1g4021 539 PRINTS Tyrosine kinase catalytic domain signature 498 520 IPR001245 GO:0004672|GO:0006468
Ssu1g4021 539 PRINTS Tyrosine kinase catalytic domain signature 389 407 IPR001245 GO:0004672|GO:0006468
Ssu1g4021 539 PRINTS Tyrosine kinase catalytic domain signature 435 445 IPR001245 GO:0004672|GO:0006468
Ssu1g4021 539 PRINTS Tyrosine kinase catalytic domain signature 454 476 IPR001245 GO:0004672|GO:0006468
Ssu1g4021 539 PRINTS Tyrosine kinase catalytic domain signature 352 365 IPR001245 GO:0004672|GO:0006468
Ssu1g4021 539 SUPERFAMILY Protein kinase-like (PK-like) 263 527 IPR011009 -
Ssu1g4021 539 SMART serkin_6 278 527 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g4021 539 ProSitePatterns Serine/Threonine protein kinases active-site signature. 395 407 IPR008271 GO:0004672|GO:0006468
Ssu1g4021 539 Gene3D Transferase(Phosphotransferase) domain 1 357 537 - -
Ssu1g4021 539 Gene3D Phosphorylase Kinase; domain 1 273 356 - -
Ssu1g4021 539 SUPERFAMILY ACT-like 177 246 IPR045865 -
Ssu1g4021 539 ProSiteProfiles ACT domain profile. 179 254 IPR002912 -
Ssu1g4021 539 PANTHER ACT-LIKE TYROSINE KINASE FAMILY PROTEIN 9 531 - -
Ssu1g4021 539 ProSiteProfiles Protein kinase domain profile. 278 532 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g4021 539 CDD STKc_MAP3K-like 284 527 - -
Ssu1g4021 539 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 9 531 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g4021 Ssu-Chr1 99181283 99192043 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g4021 5 538 MAP Kinase Kinase Kinase AT4G35780 55.738 0.0 591
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Ssu1g4021 PK_Tyr_Ser-Thr 4.9e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g4021 - - gmx:100818047 964.526