Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g4020 ATGGCCCAAGGAGAGGAAGTTGTGGTTGATTTTGAAGGTAATTATGGCCGCagcaacaacaaagaaaaaaacttagaaCCAAAGGCTAGCGGCAGCAGTCCAAGTGACAAGCTTCAAGACATGCAGGAAAAAGCCAAAGGCAGTGAATCTGTGCAAAAGAGGAAGCAAGGTCAGCAGCAAAACCAAGAAAACCACCACCGATCTTCATATTCAGGAGAAAGCGTTGCGAGGTCCACTTCACATAATTCAACTCCACGATACTCGTGGACATCACCAATAAGCAGAACAAAATCACGGCTTATTGACCCTCCAGAGGAATCGTGCGCAAATTCAGAGTCAGGAGGACAAAATGTGCCAGAAAATGACGGCAACGATGATTTCGGCGTGGACAACGTTGAGGACATGCCAGAAATTTATAAGAGAACGAGGTTCAGTGCATTCTCGTTACTTCAGTGGCTCTGTCTTGCCTCAATCGCAGTAGCCCTGCTCTCTAACCTTTGGATTTCGTGCTTTCAAAGGCTTAAACTCTGTGGTCTTCCCCTGTGGCAATGGGAGACACTGATTTTAGTGCTAATTTGTGGGCGTTTGCTCTCAGGTTGGGTAATCAAGGTAATTGTGTTCTTCGTGGAACGCAATTTTATACTAAGAAAACGAGTGTTGTATTTTGTGTACGGGTTGAAGAATTCCGTGAAGAACTGTTTCTGGTTGGGCTTGGTTTTGCTTGCGTGGCACTTTATTTTGGTCAACGCGGTGCAGAAGAAGGTCAACGACAGGATTTTGTCGTATGTGACCAAGGTTCTGGTGTGTCTGCTCATTGGCACTCTCATACGGCTTCTGAAAACCATCCTTGTTAAGGTCTTCGCCTTGCACTTCCACGTGAAATCGTTCTTTGAACGGATTCGGGAGGCTCTGTTCAGCCAATATGTGATCGAAACGTTGTCTCGTAATCGATTAACAGAAGAGGAAGGTGAAGATAGATCCGTTGGGAGGGCGCTGCGTAATAATAAGAAGCAAGATGGGGAAATGTCAATTAAGGAATTGCATAAGTTGAATCGGAGAAATATATCGGCGTGGAATATGAAGAGGATGATTAACATCATCATGCACGGGGCATTTACTACACTGGACGAACGTATATTGTGTTCAGATATCGAGGATGAGCCTTTGCTGCAAATTAGAAGCGAACGCCAAGCAAAGGTGGCAGCTCAGAAAATATTTCAGAACGTGGCGCAGCCAGGATCCCAATATATTTTCTTGCAAGATGTGATGCAGTTTATGCGAAGAGATGAAGCTTTGAAGTCAATGAATCTGTTGGGAGCAGCGTGTACAGACCAGGGCATTAGCATGTCCTCTCTTAGAGAGTGGATGgtgaATGCATTCAGAGAGAGAAGGGCACTAGCATTATCACTCAAAGACACAAAAACTGCTGTAGATGAGCTCCATAATATGTTGAACATCATTGTTGGTATTGTCATTTTGATAGTTTGGCTTGTTATTCTTGGAACTCCAATCCTACACTTCGTTATCTTCATCGGATCCCAGCTCCTATTTGCAGTGTTTGTGTTTGGGAATTCTTGTAGGACTGTTTTTGAAGCAATCATCTTCTTATTTGTAATGCACCCATTTGATGTTGGTGATCGATGTGAAGTAGATGGAGTCCAGATGATAGTGGAAGAGATGAATATACTCACGACAGTGTTTCTGAAGTACGATAACCAAAAGGTTACTTACCCAAACAGTGTTCTAGCTACCAAGCCCATTAGTAATTATCAGCGTAGTCCGGACATGGGAGATGCAGTGGATTTCTGTATTCATATCTCCACTCCATTAGACAAAGTTGCCACTATGAAAAGAAGAATTATAGAGTATATTGAAAGGAAGAATGAGCACTGGCATGTGGATCCAATGGTAATAATGAAGGATGTGGAAGACTTGAACAAATTGAACATGTCAGTGTGGCTTACACACAAAATGAATTACCAGGACATCAAAGAAAGGTGGAACAGAAGAGCCCAATTGATTGAAGAGATGATCAAAGTGTTCAGGGAACTTGATGTTGAATACCGGCTTCTTCCTATTGATGTCAATGTCCGAAATCTGCCTCCTCTGCTTTCGAATAAGCTTCCATCCAATTGGAAAACTTGTGTCAGCTCTGTCCCTTAG 2163 0.4267 MAQGEEVVVDFEGNYGRSNNKEKNLEPKASGSSPSDKLQDMQEKAKGSESVQKRKQGQQQNQENHHRSSYSGESVARSTSHNSTPRYSWTSPISRTKSRLIDPPEESCANSESGGQNVPENDGNDDFGVDNVEDMPEIYKRTRFSAFSLLQWLCLASIAVALLSNLWISCFQRLKLCGLPLWQWETLILVLICGRLLSGWVIKVIVFFVERNFILRKRVLYFVYGLKNSVKNCFWLGLVLLAWHFILVNAVQKKVNDRILSYVTKVLVCLLIGTLIRLLKTILVKVFALHFHVKSFFERIREALFSQYVIETLSRNRLTEEEGEDRSVGRALRNNKKQDGEMSIKELHKLNRRNISAWNMKRMINIIMHGAFTTLDERILCSDIEDEPLLQIRSERQAKVAAQKIFQNVAQPGSQYIFLQDVMQFMRRDEALKSMNLLGAACTDQGISMSSLREWMVNAFRERRALALSLKDTKTAVDELHNMLNIIVGIVILIVWLVILGTPILHFVIFIGSQLLFAVFVFGNSCRTVFEAIIFLFVMHPFDVGDRCEVDGVQMIVEEMNILTTVFLKYDNQKVTYPNSVLATKPISNYQRSPDMGDAVDFCIHISTPLDKVATMKRRIIEYIERKNEHWHVDPMVIMKDVEDLNKLNMSVWLTHKMNYQDIKERWNRRAQLIEEMIKVFRELDVEYRLLPIDVNVRNLPPLLSNKLPSNWKTCVSSVP 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g4020 720 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 711 - -
Ssu1g4020 720 MobiDBLite consensus disorder prediction 1 127 - -
Ssu1g4020 720 MobiDBLite consensus disorder prediction 52 97 - -
Ssu1g4020 720 SUPERFAMILY Sm-like ribonucleoproteins 531 590 IPR010920 -
Ssu1g4020 720 Gene3D - 541 590 IPR023408 -
Ssu1g4020 720 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 5 711 IPR016688 -
Ssu1g4020 720 PIRSF Memb_At2g17000 6 717 IPR016688 -
Ssu1g4020 720 Pfam Mechanosensitive ion channel 482 687 IPR006685 GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g4020 Ssu-Chr1 99165982 99168912 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g4020 2 712 Mechanosensitive Ion Channel Family AT1G53470 43.250 0.0 644
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g4020 K22048 - qsu:112009310 800.431