Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g4018 atGATCGAAGAGCCAAAAGAAGAGGTAGGAGCTGAAAAGAGAATGATGTTCAACATCGCTGCTATGCAGTCAGTGGACATCGACCCTGCCACTATCCGAAAACTAAACAGAAGACACCTTGGCATCCCTGATGACCCTGTCAGCGTGGCTACAAATCACAGGTCTCTGAGCATTAGCGACAAAATCCCCTTCCTCCAAACAGAGCTATAA 210 0.4714 MIEEPKEEVGAEKRMMFNIAAMQSVDIDPATIRKLNRRHLGIPDDPVSVATNHRSLSISDKIPFLQTEL 69
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g4018 69 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 4 66 IPR045843 GO:0003700|GO:0006355
Ssu1g4018 69 PANTHER TRANSCRIPTION FACTOR HEC3-LIKE 4 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g4018 Ssu-Chr1 99139477 99139686 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g4018 9 53 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G09750 64.444 1.89e-13 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g4018 - - gmx:100777351 81.2629