Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g4014 ATGCCTCATAAACCGGACACCGTGGTCTACCTCCACGGGACCCTCGATTTGGTGATCGTCGAGGCTCGGTTCCTTCCGAACATGGACATCCTTTCCGAGCGCATTCGCAGGTTCTTCTCCGCCCTCAACACCTGCAGCGCCTCCATCACCCGCAACCGGAACCGCAGCCAGGCCCGCCACCGCCACCGTAAGATCATCACCAGCGACCCTTACGTCACCGTCTGCCTCGCCGGCGCCACCGTGGCGCGCACCCGCGTCATCTCCAACTCGCAGGACCCGTCGTGGAACGAGCACTTCAAGATCCCGCTCGCGCACCCGGCCTCGCAGGTCGAGTTCTACGTCAAGGACAACGACATGTTCGGCGCCGACCTGATCGGAGTCGCCACCGTCTCCGCCGAGAGAATCCTCTCCGGCGAGGCCATCAGCGATTGGTTTCCGATCATAGGTTCCTTCGGGAAGCCGCCGAAGCCTGATTGCGCTGTTCGCCTCGCGATGAAATTCACGAGGTGCGAGGACAGTCCTATGTTCCGGTCCGGCGCAGAACCGGATCCGGACCGGTTCGTGGTTCGGGATTCGTATTTTCCGGTTCGGCACGGAGGGTCGGTGACGCTGTATCAGGACGCGCACGTGCCTGATTCAATGTTGCCGGAGATTGAGTTAGAGGATGGGATTGTGTTTGAGCAAGGGAAGTGCTGGGAAGATATATGTCACGCGATATTGGAAGCGCATCATTTGGTTTATATCGTGGGTTGGTCCATCTACCACAAGGTGAAGCTGGTGAGAGAGCCTTCTAAACCCTTACCTAGCGGtggaaatttgaatttgggggAGTTGCTCAAGTACAAGTCACAAGAAGGTTTGCGAGTTTTACTATTGGTTTGGGATGATAAGACTTCGCACAGCAAATTTTTCATTAACAcgACTGGAGTGATGCAAACGCATGATGAAGAAACTCGAAAGTTTTTCAAGCATTCTTCAGTTAGATGTTTGCTGTCACCAAGATATGCCAGCAGTAAGCTTAGCTTTATCAGGCAGCAGGTTGTTGGAACTCTCTTTACACATCATCAGAAATGTGTGATTGTGGATACTCAAGCACACGGCAATAATCGGAAGATAACTGCATTTATAGGTGGTCTAGATCTTTGTGATGGCCGGTATGATACGCCTGAGCATAGAATTTTACGTGATATTGACACTGTTTATCAGGACGATTATCATAATCCCACGTTTTGTgCGGGAACCAAGGGTCCGAGGCAACCATGGCATGATTTGCATTGCAAAATTGAAGGGCCTGCTGCGTATGATATACTCACTAATTTTGAGCAGCGCTGGAGAAAAGCCTCCAAATGGTCCGAGTTGGGTCGAAAACTCAAAAGAGTGTCTCACTTGCACGATGATTCTTTGATCAAGTTAGAACGCATCTCTTGGATTCTTAGTCCTTCAGAACCAATTCCAAATGATGATCCTGAACTATGGGTTTCGAAGGAAGACGATCCTAAAAATTGGCATGTTCAGGTTACTAGTTCACTGTCTTTGAAGTGTGTCTTCtgtttactttttctttcaacagAGAATTTGTTTACTTGTACTTTATGTTTTTCACAGGTTTTTCGATCGATAGATTCTGGCTCTTTGAAAGGATTTCCCAAGGATGTATATGAAGCGGAGGCTCAGAACCTTGTCTGTGCAAAAAATTTGGTCATAGACAAAAGTATTCAAACAGCATATATACATGCGATCAGATCTGctcaacattttatttatatcgaGAATCAATATTTTGTTGGATCATCCTTTGCTTGGCCAGCTTACAAAGAAGCAGGTGCTGATAACCTAATTCCGATGGAGTTGGCACTGAAGATAGTCAGTAAGATAAGATCCAAGGAGAGATTTACagtttatattgtcatcccAATGTGGCCCGAAGGTGCCCCTTCTTCTGTTTCAGTGCAAGAGATACTCTTTTGGCAGGGACAAACTATGCAAATGATGTATGAAATCATAGCTCGGGAGTTAAACTCTATGCACCTGGATGATAGTCATCCACAAGATTACCTCAATTTTTACTGTCTTGGAAACCGAGAGAAGTTGACAACTGAAGTTTCAAGTTCAAGTAATTCACCTTCAGATAATGGCGAAACGGTTTCAGCCTCACAAAAGTTCCGACGGTTTATGATTTATGTACATGCCAAGGGAATGATTGTGGATGATGAATATGTAATTCTTGGGTCTGCCAATATCAACCAACGATCTTTGGCTGGATCAAGAGATACTGAGATAGCAATGGGTGGATATCAACCCCATCATACATGGAGTGAGAAAAAGGGACATCCACATGGCCAGGTATATGGGTATAGAATGTCTCTGTGGGCAGAACACCTGGGGAACACACAAGCTTGCTTCAAGGAGCCTGAAAGTTTGGACTGCGTGAAAAGTGTGAACCAGATTGCTGAAGACAACTGGAAGAAGTACACAGCTGATGATTTTAGTCCATTGCAAGGGCACCTTATGAAATATCCTGTGAGTGTAAATGCCAATGGGAAGGTAAAGTCCTTACCTGGATATGAGTCTTTCCCAGATGTTGGCGGCAAGGTGCTTGGCTCCCGGTCTACCCTTCCTGATGCTCTAACTACGTAG 2637 0.4592 MPHKPDTVVYLHGTLDLVIVEARFLPNMDILSERIRRFFSALNTCSASITRNRNRSQARHRHRKIITSDPYVTVCLAGATVARTRVISNSQDPSWNEHFKIPLAHPASQVEFYVKDNDMFGADLIGVATVSAERILSGEAISDWFPIIGSFGKPPKPDCAVRLAMKFTRCEDSPMFRSGAEPDPDRFVVRDSYFPVRHGGSVTLYQDAHVPDSMLPEIELEDGIVFEQGKCWEDICHAILEAHHLVYIVGWSIYHKVKLVREPSKPLPSGGNLNLGELLKYKSQEGLRVLLLVWDDKTSHSKFFINTTGVMQTHDEETRKFFKHSSVRCLLSPRYASSKLSFIRQQVVGTLFTHHQKCVIVDTQAHGNNRKITAFIGGLDLCDGRYDTPEHRILRDIDTVYQDDYHNPTFCAGTKGPRQPWHDLHCKIEGPAAYDILTNFEQRWRKASKWSELGRKLKRVSHLHDDSLIKLERISWILSPSEPIPNDDPELWVSKEDDPKNWHVQVTSSLSLKCVFCLLFLSTENLFTCTLCFSQVFRSIDSGSLKGFPKDVYEAEAQNLVCAKNLVIDKSIQTAYIHAIRSAQHFIYIENQYFVGSSFAWPAYKEAGADNLIPMELALKIVSKIRSKERFTVYIVIPMWPEGAPSSVSVQEILFWQGQTMQMMYEIIARELNSMHLDDSHPQDYLNFYCLGNREKLTTEVSSSSNSPSDNGETVSASQKFRRFMIYVHAKGMIVDDEYVILGSANINQRSLAGSRDTEIAMGGYQPHHTWSEKKGHPHGQVYGYRMSLWAEHLGNTQACFKEPESLDCVKSVNQIAEDNWKKYTADDFSPLQGHLMKYPVSVNANGKVKSLPGYESFPDVGGKVLGSRSTLPDALTT 878
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g4014 878 CDD C2_plant_PLD 8 168 - -
Ssu1g4014 878 Pfam Phospholipase D C terminal 799 868 IPR024632 -
Ssu1g4014 878 Pfam C2 domain 13 147 IPR000008 -
Ssu1g4014 878 ProSiteProfiles C2 domain profile. 1 145 IPR000008 -
Ssu1g4014 878 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 350 385 IPR001736 GO:0003824
Ssu1g4014 878 PANTHER PHOSPHOLIPASE D 533 877 IPR015679 -
Ssu1g4014 878 Gene3D C2 domain 11 175 IPR035892 -
Ssu1g4014 878 Gene3D Endonuclease Chain A 225 468 - -
Ssu1g4014 878 PANTHER PHOSPHOLIPASE D 6 511 - -
Ssu1g4014 878 PANTHER PHOSPHOLIPASE D 6 511 IPR015679 -
Ssu1g4014 878 SUPERFAMILY Phospholipase D/nuclease 189 454 - -
Ssu1g4014 878 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 724 751 IPR001736 GO:0003824
Ssu1g4014 878 SUPERFAMILY Phospholipase D/nuclease 569 809 - -
Ssu1g4014 878 Pfam Phospholipase D Active site motif 351 385 IPR001736 GO:0003824
Ssu1g4014 878 SMART C2_3c 14 144 IPR000008 -
Ssu1g4014 878 SMART pld_4 724 751 IPR001736 GO:0003824
Ssu1g4014 878 SMART pld_4 350 385 IPR001736 GO:0003824
Ssu1g4014 878 Gene3D Endonuclease Chain A 549 770 - -
Ssu1g4014 878 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 10 152 IPR035892 -
Ssu1g4014 878 PIRSF PLD_plant 532 878 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Ssu1g4014 878 PIRSF PLD_plant 2 520 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Ssu1g4014 878 Pfam PLD-like domain 577 760 IPR025202 -
Ssu1g4014 878 PANTHER PHOSPHOLIPASE D 533 877 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g4014 Ssu-Chr1 99088699 99094903 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g4014 6 707 Phospholipase D Gene Family (Wang group) AT4G35790 62.813 0.0 929
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g4014 K01115 - gmx:100795859 1615.9