Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g4006 ATGCTTGATTCGGTCCTTCTGGCGCTTTTCTTGCCGTGTCTTGGCATGAGCGCGGTTTTCATCGTCTACATGTGCCTTCTTTGGTACGCCACTACCCGCCACCACCCCCCCAATGACGGGCAACCGGTGAAGCCCGTCACTGACAAGGGTCTGTCCGCTTTGGAGTTGGAGAAGCTTCCCAGAATCACCGGCAAGGAACTCGTCCTGGGCACCGAATGCGCTGTCTGCCTCGACGAGATCGAGACCGACCAACCGGCCAGACTGGTTCCCGGTTGCAACCACGGCTTCCATGTCCATTGCGCTGACACCTGGCTCTCCAAGCACCCCATATGCCCCGTTTGCAGAACCAAGCTCGACCCTCAAATTTTCACTTCCCAAAGCCCCTGCTGA 390 0.5795 MLDSVLLALFLPCLGMSAVFIVYMCLLWYATTRHHPPNDGQPVKPVTDKGLSALELEKLPRITGKELVLGTECAVCLDEIETDQPARLVPGCNHGFHVHCADTWLSKHPICPVCRTKLDPQIFTSQSPC 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g4006 129 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL23 1 126 - -
Ssu1g4006 129 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 1 126 - -
Ssu1g4006 129 ProSiteProfiles Zinc finger RING-type profile. 73 115 IPR001841 -
Ssu1g4006 129 SMART ring_2 73 114 IPR001841 -
Ssu1g4006 129 SUPERFAMILY RING/U-box 72 121 - -
Ssu1g4006 129 Pfam Ring finger domain 72 115 IPR001841 -
Ssu1g4006 129 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 38 121 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g4006 Ssu-Chr1 98934539 98934928 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g4006 1 129 C3H Transcription Factor Family AT5G42200 57.353 2.28e-50 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g4006 K19037 - gmx:100776003 261.151
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0034 5 555108 555494 Ssu1g4006 1 98934539 98934928 PCT