Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3999 ATGTGGCAATATCCAAACCCAGGAAAAAAGGCTGAAACATGGCCTCATCACCAGCCAAACCTGCAGGAATTATTTTTCAGTGTGGGAGAGAAAGCAATGGCCTCTTCGCCATGTGATTTCTGGACCCATCTCAGTGACTCACTCTCCCCATCTCCTCCTCCTTCCTCAATTTCCCAAACCTCTTCTTCATCCACTGAGCATGTCTGGAACGATATTAAACTCGCCTCTCTCTCAAATACCCCCGTTGACTTGGACTTCGACCACCACTCTTCCTTCACTCCCACATCGGCTAATTCTTTTCTCAACCACCCTCCATCCACTGTGCTCACCCTCAGTTCTACTCCCTCTAACTTCCACCAACACAATCATCACTCTTTGCTTTCTGTCTCTAAGACTTCCTTTGACGCCTCCGACTCCAACAGCAAGAAAACTACTCAGCAAGATCAACGGCACATGCGCATCATCAAGAATCGAGAATCCGCTGTTCGGTCTAGAGCCAGAAAACAGGCTTATAAAAAAGGCTTGGAAGTTGAAATTGCCCGTTTGACGGAAGAGAATTCCAGATTAAGAACACAATTGGAAGAGTTGCAGTGCCGCATATTCTCTTCTGAAAACCCTCCCAGAATGGGCGCTCCGTGTAGAACCTCGTCATCTCCATTTTGA 663 0.4721 MWQYPNPGKKAETWPHHQPNLQELFFSVGEKAMASSPCDFWTHLSDSLSPSPPPSSISQTSSSSTEHVWNDIKLASLSNTPVDLDFDHHSSFTPTSANSFLNHPPSTVLTLSSTPSNFHQHNHHSLLSVSKTSFDASDSNSKKTTQQDQRHMRIIKNRESAVRSRARKQAYKKGLEVEIARLTEENSRLRTQLEELQCRIFSSENPPRMGAPCRTSSSPF 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3999 220 MobiDBLite consensus disorder prediction 131 150 - -
Ssu1g3999 220 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 51 197 IPR043452 GO:0003700|GO:0045893
Ssu1g3999 220 Pfam bZIP transcription factor 147 197 IPR004827 GO:0003700|GO:0006355
Ssu1g3999 220 Gene3D - 148 200 - -
Ssu1g3999 220 SUPERFAMILY Leucine zipper domain 150 198 IPR046347 GO:0003700|GO:0006355
Ssu1g3999 220 CDD bZIP_plant_BZIP46 149 200 - -
Ssu1g3999 220 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 147 197 IPR004827 GO:0003700|GO:0006355
Ssu1g3999 220 Coils Coil 165 199 - -
Ssu1g3999 220 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 153 167 IPR004827 GO:0003700|GO:0006355
Ssu1g3999 220 PANTHER PROTEIN FD 51 197 - -
Ssu1g3999 220 SMART brlzneu 145 209 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3999 Ssu-Chr1 98820310 98821648 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3999 136 220 bZIP Transcription Factor Family AT3G56850 51.163 1.13e-13 66.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Ssu1g3999 bZIP_1 1.1e-11 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3999 K14432 - gmx:778127 213.772