Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3993 ATGGAGTTGTGGACCGTGGTCTGTGTGTGTTGTGTTTTGTGTCTCAGTCTTTCTCACACTGCAGAGGCTATCATTACGCTACCAGGCAACGAAACAATCCCAGCACTGATTTTGTTCGGGGATTCCATCGTTGACACAGGCAGTAACAATAACATAATGACCGCGCTTAAGTGCAATTTCCCTCCTTATGGGAGGGATTTCCAGGACGGGAAACCAACGGGAAGATTCAGCAATGGCAAGGTCCCTGCTGACTTCGTAGCGGAAGAATTGGGAATCAGCCAATTTATACCACCGTATATGAGTCCTAGTTTGCAGCCTGGTGATCTCCTCAAGGGAGTCAACTTCGCTTCGGGTGGCACCGGATATGATCCTTTGACCGCACAATTAGTGTCAGTTATACCGTTATCTGAGCAACTGGAGCAATTCAAAGAATACATAGGAAAGCTGAAAGGAAATTTTGGAGAAGCAAAAACCAGCTTCATCTTGTCCAAAAGTCTAGTACTTGTGGTTTCAAGCAGCAACGACATTGCCAATACTTATTTTGCGACTGGAGTTAGGAAACTGCATTATGATATTCCCACTTACACTGATATGTTGGTGCAAGCCGCTTCTTCTTTCGTTAAGgaattacATGGATTGGGGGCAAGGAGAATAGGAGTGTTTGGTGCACCTCCACTAGGATGCTTGCCATTCGTGCGAACATTGTTCGGAGGTATACAGAGAATGTGCACCGAAGAAATAAACATGGCATCAAAATTGTTTAATTCTAAACTATCTGCAGAGCTGCACAACCTAAACCAAAGTCTGCCTCAAGCGAAGGTGATGCATATCCAAGTTTACGACCCTTTGCTCGATATCATCCAAAACCCAACCAAATATGGATTTGAAGTTGCTGACAGGGGATGCTGCGGCACAGGGACTGTAGAGGCGGCTTTTCTGTGTAACCCGTTTGATGTGGAAACCTGCACGAACGATTCTAAATATGTGTTTTGGGACAGCTACCATCCCACACAGAGGACATACCAGATTCTTGTTGGTCAAATCGTCGACACATATATAAACAGCTTCTCTTGA 1074 0.4479 MELWTVVCVCCVLCLSLSHTAEAIITLPGNETIPALILFGDSIVDTGSNNNIMTALKCNFPPYGRDFQDGKPTGRFSNGKVPADFVAEELGISQFIPPYMSPSLQPGDLLKGVNFASGGTGYDPLTAQLVSVIPLSEQLEQFKEYIGKLKGNFGEAKTSFILSKSLVLVVSSSNDIANTYFATGVRKLHYDIPTYTDMLVQAASSFVKELHGLGARRIGVFGAPPLGCLPFVRTLFGGIQRMCTEEINMASKLFNSKLSAELHNLNQSLPQAKVMHIQVYDPLLDIIQNPTKYGFEVADRGCCGTGTVEAAFLCNPFDVETCTNDSKYVFWDSYHPTQRTYQILVGQIVDTYINSFS 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3993 357 PANTHER GDSL ESTERASE/LIPASE EXL3 1 353 - -
Ssu1g3993 357 Gene3D SGNH hydrolase 25 354 IPR036514 -
Ssu1g3993 357 SUPERFAMILY SGNH hydrolase 35 352 - -
Ssu1g3993 357 PANTHER GDSL-LIKE LIPASE/ACYLHYDROLASE 1 353 - -
Ssu1g3993 357 CDD SGNH_plant_lipase_like 34 352 IPR035669 -
Ssu1g3993 357 Pfam GDSL-like Lipase/Acylhydrolase 37 344 IPR001087 GO:0016788
Ssu1g3993 357 ProSitePatterns Lipolytic enzymes "G-D-S-L" family, serine active site. 36 47 IPR008265 GO:0006629|GO:0016298
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3993 Ssu-Chr1 98726620 98730134 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3993 7 357 Pollen Coat Proteome AT1G75910 37.571 6.07e-76 236
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3993 - - gmx:112997680 604.364