Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3985 ATGACTCTTGAAGATTTCTTTACCTTGACTGAGATGAAAGATGGGCTCACAGCACCTTCTCGGGTGCAGGAGCTGGTCTCTGTGATGCAGAAGGAGAAAGATTGTGAGGTTAAAAATGCTGCTGATGCAACAAGGCAGTGGGCTGCTGTTGCAAGCACTATTGCTGCTACAGAGAATAAAGATTGCCTGGatctttttattcaattagatgGACTTTGCTTCATTAATAGATGGTTAAAGGATGCCCAAAATTTTGCAGTTGATGCAAATGAAAGCTTTGTTGAAGAATCTATCACTGCAATGTTACGTGCAGTTGAAAAGCTGCATCTAGACAGTGAGAAGTCAATGTCATCAGGAATTCGCATCACTGTAAGTAATCTTCTTGGCCATCATAGCTCTAGGGTTCAGGATAGAGCAAGGACATTATTTGACAGCTGGAAGGGAGGTGGAAATGGTGATACTGAATCTCATGATGTGGAGCTTGCTAAGGTTGACAATGCAAGTGATACAATTGTCAGGGAAGAAGGTCAGCCATCTGCTGTGAATGTAGCTGGCAATGATAATAGTGAGAAATCTCTATTGAGAAGCTCAGATAATTTACCAATACATAGTTCTGATAATGTGCTCCAGTCATCCACCAGTGTGGAATGTGATGACATCAAAGAGGGATCAGCAAACCATGTTGCTGATGTTCCATCTTCTGCTCAAGAAGTTGCTCCCATACGTGAAGGATTGCCTTTATGCACTACAGGTGAGACCACATCAGTTGGAACCTGTAACTTTCCCATTCCAAATCAAGGCAGTTTTGAAGAACAGTCAGACGTGGTACAGTTAAATGACTTAGCTAAAATGGAAAAGCAGGAGCAAAATGTTAATGACCCTCCAGAAAAATTAGGAGCACCAGAGGTCTGTTCTGTGTCCTCTAAGCCAGAGCCAGAGCCTGTTTCCATGGTTTCTTGTGAAGCAAAAGCACCAGAATCTGTGAAAGAACCAGCTTTAGAGCAAACTGTTGCACACAATGAGGACAAAGTTTgtcataaattaattacttcatCTGATAGGAGGAGTGGAGAAGATGATGTCAGAACTGTAACCAGCATTACACAAGTTTCCAAAGCTGCAGAAAATGATAATGACTGTTGTTCTAATGCATTGCAGGACACATCAGTCAGTGACAGTAACTTGGGAAAGACTGAGCTGTTAGACATGTCTGTCTCTGCAACAGAATATGTCACATCATCAAAGGAAGGCAAGGGCCATGTTTATAATGATGACGAAGATACATCAAATGGTTCTGATTCTAGTAAACCTGGAATAGATTTCAGAAGTCCTAACATAATTGACAAGAGAGGTTCTGACAATGAACTTGACTGTGGCATTGTGGATGCTTTAGAATTTGCCCGACAAGTTGCTCAGGAAGTTAGTAGAGAAGTCTGCAGTTCTTCAGAAAAAATCTCAGAAGAAAGAATCAGGAAACCAGGCAGTCCAGATTCTGTAAGACAAGAGGATGAGCTCACTCCTGTCCCACCCAAGGAGGTCTCCTCCAGACAAAACCATGCTACTGAGGCATGTTCAATTAAGGGGCATGCGAGTATTTTAGACAACACTGAGGTTGCACCGGAATGCGGACCTGACGTGATGTCCTTGGAGGTGACTGAAGCAGCTCAAGATTCAGGAGGTAATTCAGAGAAACAATTCTGCGGCTTTGATCTCAATGAAGTTGGTTCTGATGATATGGATGTTTCTGTAAGTACTATGTCTACCCCAATACCTGTTGTCTCTGCTTCAAGGCCTATGCCAACTCCTGGGTTTCCTGGTGCCCCTTTGCAGTTTGAGGGAACACTTGGATGGAAAGGATCAGCTGCCACCAGTGCTTTTCGACCTGCATCGCCTCGTAAAAATTGTGATAGTGAGAGGAATCTTTCTGTTGATATGAACTTTGACACGTCCAAGCAGAGGCAGGATTGGCTTGATATTGATCTAAATGTGGCTGAGGGTGAAGAAGGCACAGTAAAACCTATTGCTGAATCTTCAGGCAGGCCCTCTGGGCAATCATCAATTGAACTTACTCCTAAAAGATCAAGCTGGCTTGAATTTGATTTGAACAGTATCGGTGATGATGGCGACACCCAACCTTCAGATCACAGGATGGAGGGACAACTCTTTCTTGGAAGAAATGGCTATTGGAGTCCATCCCccgcatcatcatcatcatcaatgcaGCCATCTGTTAGAAACATTGATTTGAACGACAGGCCTTGCCTTCAAACTGATTGGTGGACCAGGGGCCCAGTAAATGCTCCTGTTATCTCTCTTTTGGGCGCCAAGGTAGAAGTTGGTAAAAAAGAACGTGTTCCTCAAACTTTGTCTTTGCCAAATGGCAAGGCTATTGAACCTGCAATAGATCTTACAATATCAAGAGCAGGTGGCGTTTTAGGGATGGCCCCCACAGTACCCTTCAATCATTCATCTGTTTTTGGGTATAATGGAGTGACATCAGCTTCAGCTGTACCCGCAATGTCTTTTTCATCAGCCATGTACGGGTCAGGTGGCACAATTCCATACATGATGGACTCAAGAGGAGCTCCAGTTGTCCCTCAAGTAGGTGGATCTTCATCAACTGTCCTTTCATCTTACTCTCAGCCACCAATCTTTATGAACATGACTGGAACACAACTTGGTCTGAATGGATTTGGACCTTCACGTCCTAACTTTGACCTGAACTCTGGCTTCATGACTGAGGGTGGGAATAGAGATGCATTGGCAGCAAGGCAATTTTTCTTTCCTGGTCAGGGCAGGACTGTGGAGGAGCATGTAAGAACCATGGCACAACCCTCAAGTTCTGGAGTTAGTGGGAAACGAAAGGAACCAGACAGTGGTTGGGAACCCTACTCATTTGGCTACAAACATCCGCAACCTCCATGGAAGTAG 2931 0.433 MTLEDFFTLTEMKDGLTAPSRVQELVSVMQKEKDCEVKNAADATRQWAAVASTIAATENKDCLDLFIQLDGLCFINRWLKDAQNFAVDANESFVEESITAMLRAVEKLHLDSEKSMSSGIRITVSNLLGHHSSRVQDRARTLFDSWKGGGNGDTESHDVELAKVDNASDTIVREEGQPSAVNVAGNDNSEKSLLRSSDNLPIHSSDNVLQSSTSVECDDIKEGSANHVADVPSSAQEVAPIREGLPLCTTGETTSVGTCNFPIPNQGSFEEQSDVVQLNDLAKMEKQEQNVNDPPEKLGAPEVCSVSSKPEPEPVSMVSCEAKAPESVKEPALEQTVAHNEDKVCHKLITSSDRRSGEDDVRTVTSITQVSKAAENDNDCCSNALQDTSVSDSNLGKTELLDMSVSATEYVTSSKEGKGHVYNDDEDTSNGSDSSKPGIDFRSPNIIDKRGSDNELDCGIVDALEFARQVAQEVSREVCSSSEKISEERIRKPGSPDSVRQEDELTPVPPKEVSSRQNHATEACSIKGHASILDNTEVAPECGPDVMSLEVTEAAQDSGGNSEKQFCGFDLNEVGSDDMDVSVSTMSTPIPVVSASRPMPTPGFPGAPLQFEGTLGWKGSAATSAFRPASPRKNCDSERNLSVDMNFDTSKQRQDWLDIDLNVAEGEEGTVKPIAESSGRPSGQSSIELTPKRSSWLEFDLNSIGDDGDTQPSDHRMEGQLFLGRNGYWSPSPASSSSSMQPSVRNIDLNDRPCLQTDWWTRGPVNAPVISLLGAKVEVGKKERVPQTLSLPNGKAIEPAIDLTISRAGGVLGMAPTVPFNHSSVFGYNGVTSASAVPAMSFSSAMYGSGGTIPYMMDSRGAPVVPQVGGSSSTVLSSYSQPPIFMNMTGTQLGLNGFGPSRPNFDLNSGFMTEGGNRDALAARQFFFPGQGRTVEEHVRTMAQPSSSGVSGKRKEPDSGWEPYSFGYKHPQPPWK 976
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3985 976 PANTHER TRANSCRIPTION ELONGATION FACTOR (TFIIS) FAMILY PROTEIN-RELATED 1 976 - -
Ssu1g3985 976 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 61 154 IPR035441 -
Ssu1g3985 976 ProSiteProfiles TFIIS N-terminal domain profile. 73 153 IPR017923 -
Ssu1g3985 976 PANTHER TRANSCRIPTION ELONGATION FACTOR (TFIIS) FAMILY PROTEIN 1 976 - -
Ssu1g3985 976 MobiDBLite consensus disorder prediction 940 976 - -
Ssu1g3985 976 MobiDBLite consensus disorder prediction 479 519 - -
Ssu1g3985 976 MobiDBLite consensus disorder prediction 411 448 - -
Ssu1g3985 976 MobiDBLite consensus disorder prediction 289 312 - -
Ssu1g3985 976 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 17 149 IPR035441 -
Ssu1g3985 976 MobiDBLite consensus disorder prediction 480 509 - -
Ssu1g3985 976 Pfam TFIIS helical bundle-like domain 101 147 IPR017923 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3985 Ssu-Chr1 98475594 98478568 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Ssu1g3985 Med26 0.00033 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3985 - - ccaj:109815659 1597.41